Theoretical Study of the Stabilization of Lysine Through Pseudocyclic Conformation

This study investigates lysine's conformational behavior and thermal properties at the PBE0-GD3/Def2-TZVP level for geometry optimizations and CCSD(T)/Def2-TZVP level of theory for the calculation of thermal population. Lysine forms pseudocyclic conformations stabilized by hydrogen bonds between amino and carboxyl groups. We identified 36 conformers, split evenly between L- and D-lysine, with small energy differences between structures. When the pseudocyclic conformation is disrupted, the energy is highly affected. Lysine's geometries are remarkably sensitive to temperature. These findings highlight lysine's temperature sensitivity and its potential for diverse applications. Its structural plasticity across 0-1800 K suggests roles in material science, such as temperature-responsive semiconductor thin films, coatings, sensors, catalysis through tunable active sites, and biomedicine for drug delivery or protein stabilization. The insights provided by this study emphasize lysine's versatility as a biomolecule and its implications for technological innovation across multiple fields.

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Publication Details

Journal
Acta chimica slovenica
Published
2025-06-11
DOI
https://doi.org/10.17344/acsi.2024.9099
Primary Topic
Molecular Junctions and Nanostructures
Type
article
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article

Theoretical Study of the Stabilization of Lysine Through Pseudocyclic Conformation

R. Ochoa-Landı́n, S. J. Castillo, Aned de León, José Luis Cabellos et al.
Acta chimica slovenica
Molecular Junctions and Nanostructures
article

Theoretical Study of the Stabilization of Lysine Through Pseudocyclic Conformation

R. Ochoa-Landı́n, S. J. Castillo, Aned de León, José Luis Cabellos, Germán Avila-Sierra
article en

Abstract

This study investigates lysine's conformational behavior and thermal properties at the PBE0-GD3/Def2-TZVP level for geometry optimizations and CCSD(T)/Def2-TZVP level of theory for the calculation of thermal population. Lysine forms pseudocyclic conformations stabilized by hydrogen bonds between amino and carboxyl groups. We identified 36 conformers, split evenly between L- and D-lysine, with small energy differences between structures. When the pseudocyclic conformation is disrupted, the energy is highly affected. Lysine's geometries are remarkably sensitive to temperature. These findings highlight lysine's temperature sensitivity and its potential for diverse applications. Its structural plasticity across 0-1800 K suggests roles in material science, such as temperature-responsive semiconductor thin films, coatings, sensors, catalysis through tunable active sites, and biomedicine for drug delivery or protein stabilization. The insights provided by this study emphasize lysine's versatility as a biomolecule and its implications for technological innovation across multiple fields.

Acta chimica slovenicaVol. 72(2)
SunEdison (United States) (US), Comrat State University (MD), Šolski Center Velenje (SI), Universidade Metropolitana de Santos (BR), Ramon.Space (Israel) (IL)
Industry, innovation and infrastructure
Openalex Percentile: Top 89%
Molecular Junctions and Nanostructures
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Theoretical Study of the Stabilization of Lysine Through Pseudocyclic Conformation — R. Ochoa-Landı́n, S. J. Castillo, et al. · Acta chimica slovenica (2025) | TGRS Research Map | TGRS