Automated Chemical Shift Assignments of MAS Solid-State NMR Spectra of Complex Protein Systems by ssPINE/ssPINE-POKY

Solid-state nuclear magnetic resonance (ssNMR) spectroscopy enables studying complex macromolecules with low solubility. Compared to solution NMR, few tools exist for biomacromolecule ssNMR data analysis. A key challenge is assigning spin systems due to low peak dispersion. Broad peaks from large dipolar couplings and shift anisotropy cause significant overlap and missing peaks. To address this, we introduce ssPINE-POKY, a user-friendly graphical user interface (GUI) integrated into the POKY suite. ssPINE-POKY streamlines the automation of spin system recognition and chemical shift assignment in multidimensional ssNMR spectra by integrating the ssPINE algorithm within an intuitive interface. The platform allows easy and fast job submission, real-time result visualization, and enhanced analysis through additional built-in tools, significantly improving the efficiency of ssNMR data interpretation.

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Publication Details

Journal
Applied Sciences
Published
2025-06-11
DOI
https://doi.org/10.3390/app15126563
Citations
1
Primary Topic
Advanced NMR Techniques and Applications
Type
article
Field-Weighted Citation Impact
0.76

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article

Automated Chemical Shift Assignments of MAS Solid-State NMR Spectra of Complex Protein Systems by ssPINE/ssPINE-POKY

Mehdi Rahimi, Woonghee Lee, A. Giraldo
1 citations
Applied Sciences
Advanced NMR Techniques and Applications
0.76
article

Automated Chemical Shift Assignments of MAS Solid-State NMR Spectra of Complex Protein Systems by ssPINE/ssPINE-POKY

Mehdi Rahimi, Woonghee Lee, A. Giraldo
article en
1 citations

Abstract

Solid-state nuclear magnetic resonance (ssNMR) spectroscopy enables studying complex macromolecules with low solubility. Compared to solution NMR, few tools exist for biomacromolecule ssNMR data analysis. A key challenge is assigning spin systems due to low peak dispersion. Broad peaks from large dipolar couplings and shift anisotropy cause significant overlap and missing peaks. To address this, we introduce ssPINE-POKY, a user-friendly graphical user interface (GUI) integrated into the POKY suite. ssPINE-POKY streamlines the automation of spin system recognition and chemical shift assignment in multidimensional ssNMR spectra by integrating the ssPINE algorithm within an intuitive interface. The platform allows easy and fast job submission, real-time result visualization, and enhanced analysis through additional built-in tools, significantly improving the efficiency of ssNMR data interpretation.

Applied SciencesVol. 15(12)
University of Colorado Denver (US)
University of Colorado Denver
Openalex Percentile: Top 30%
Advanced NMR Techniques and Applications
0.76
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