Identification and Expression Analysis of Rice MYB Family Members in Response to Heat Stress

With the continuous rise in global temperatures, heat stress has become a significant threat to rice (<i>Oryza sativa</i> L.) growth and yield. MYB transcription factors, the largest family of genes in plants, play a crucial role in mediating responses to various abiotic stresses. However, the specific functions of MYB genes in rice under heat stress remain largely unexplored. In this study, we conducted a comprehensive genome-wide characterization of the MYB transcription factor family and performed an RNA-seq analysis to identify OsMYB genes that are responsive to heat stress. We identified 229 MYB genes in rice, 134 of which exhibited significant expression changes under heat treatment. An RT-qPCR analysis validated the RNA-seq results for 15 MYB genes, confirming significant expression changes, such as the upregulation of <i>Os02g0685200</i> after heat stress and the downregulation of <i>Os05g0579600</i>. Six highly responsive genes were selected for further analysis. <i>Cis</i>-acting elements associated with hormone response and abiotic stress were identified in the promoter regions of these genes. A subcellular localization analysis revealed that, except for <i>Os05g0579600</i>, which located to both the nucleus and cytoplasm, the other MYB genes (<i>Os01g0192300</i>, <i>Os02g0685200</i>, <i>Os06g0637500</i>, <i>Os06g0669700,</i> and <i>Os09g0106700</i>) were predominantly located in the nucleus. In yeast, <i>Os01g0192300</i>, <i>Os06g0637500</i>, and <i>Os06g0669700</i> exhibited transcriptional activation activity, while <i>Os02g0685200</i> and <i>Os09g0106700</i> showed transcriptional repression activity. Notably, these genes responded not only to heat stress but also to other abiotic stresses, such as cold, salt, and heavy metal cadmium. This study provides valuable insights into the functional roles of OsMYB family genes in the heat stress response, identifying <i>Os01g0192300</i>, <i>Os02g0685200</i>, <i>Os05g0579600</i>, <i>Os06g0637500</i>, <i>Os06g0669700</i>, and <i>Os09g0106700</i> as potential key genes involved in heat tolerance in rice.

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Publication Details

Journal
Plants
Published
2025-06-11
DOI
https://doi.org/10.3390/plants14121784
Citations
2
Primary Topic
Plant Gene Expression Analysis
Type
article
Field-Weighted Citation Impact
1.61
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article

Identification and Expression Analysis of Rice MYB Family Members in Response to Heat Stress

Yaohuang Jiang, Yanchun Yu, Dianrong Ma, Yaliang Ji et al.
2 citations
Plants
Plant Gene Expression Analysis
1.61
article

Identification and Expression Analysis of Rice MYB Family Members in Response to Heat Stress

Yaohuang Jiang, Yanchun Yu, Dianrong Ma, Yaliang Ji, Yu Qiao, Liang Xiao, Fei Chen, Limin Wu, He Zhao
article en
2 citations

Abstract

With the continuous rise in global temperatures, heat stress has become a significant threat to rice (<i>Oryza sativa</i> L.) growth and yield. MYB transcription factors, the largest family of genes in plants, play a crucial role in mediating responses to various abiotic stresses. However, the specific functions of MYB genes in rice under heat stress remain largely unexplored. In this study, we conducted a comprehensive genome-wide characterization of the MYB transcription factor family and performed an RNA-seq analysis to identify OsMYB genes that are responsive to heat stress. We identified 229 MYB genes in rice, 134 of which exhibited significant expression changes under heat treatment. An RT-qPCR analysis validated the RNA-seq results for 15 MYB genes, confirming significant expression changes, such as the upregulation of <i>Os02g0685200</i> after heat stress and the downregulation of <i>Os05g0579600</i>. Six highly responsive genes were selected for further analysis. <i>Cis</i>-acting elements associated with hormone response and abiotic stress were identified in the promoter regions of these genes. A subcellular localization analysis revealed that, except for <i>Os05g0579600</i>, which located to both the nucleus and cytoplasm, the other MYB genes (<i>Os01g0192300</i>, <i>Os02g0685200</i>, <i>Os06g0637500</i>, <i>Os06g0669700,</i> and <i>Os09g0106700</i>) were predominantly located in the nucleus. In yeast, <i>Os01g0192300</i>, <i>Os06g0637500</i>, and <i>Os06g0669700</i> exhibited transcriptional activation activity, while <i>Os02g0685200</i> and <i>Os09g0106700</i> showed transcriptional repression activity. Notably, these genes responded not only to heat stress but also to other abiotic stresses, such as cold, salt, and heavy metal cadmium. This study provides valuable insights into the functional roles of OsMYB family genes in the heat stress response, identifying <i>Os01g0192300</i>, <i>Os02g0685200</i>, <i>Os05g0579600</i>, <i>Os06g0637500</i>, <i>Os06g0669700</i>, and <i>Os09g0106700</i> as potential key genes involved in heat tolerance in rice.

PlantsVol. 14(12)
Shenyang Agricultural University (CN), Hangzhou Normal University (CN), Rice Research Institute (CN), Compass Technology (China) (CN), Liaoning Academy of Agricultural Sciences (CN), Eastern Liaoning University (CN)
Openalex Percentile: Top 17%
Plant Gene Expression Analysis
1.61
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