Identification of Cuproptosis-Related Diagnostic Biomarkers in COPD by Intergrating Machine Learning and Bioinformatics

慢性阻塞性肺疾病(chronic obstructive pulmonary disease,COPD)作为全球主要致死疾病之一,与铜死亡密切相关。本研究旨在从铜死亡相关基因中筛选COPD诊断生物标志物。我们分析了来自GEO数据库的三个数据集(GSE106986、GSE103174、GSE71220)。在标准化及归一化后,基于文献中确定的铜死亡相关基因,我们在GSE106986中进行差异表达分析,识别出7个铜死亡相关差异表达基因及2个患者亚群(C1/C2)。通过GO和KEGG富集分析、相关性分析及单样本基因集富集分析,提示差异基因与炎症、氧化应激和免疫应答相关通路有关。进一步采用WGCNA、LASSO和SVM算法筛选出5个核心基因,其中RALB和SLC31A1为关键诊断标志物。在GSE103174和GSE71220中验证其诊断性能,ROC曲线显示RALB和SLC31A1联合AUC为0.77。Chronic obstructive pulmonary disease (COPD), a leading global cause of mortality, is closely linked to cuprotosis. This study aimed to identify diagnostic biomarkers for COPD from cuprotosis-related genes. Three GEO datasets (GSE106986, GSE103174, GSE71220) were analyzed. After normalization, differential expression analysis in GSE106986 identified 7 cuprotosis-related DEGs and 2 patient subgroups (C1/C2) using literature-curated cuprotosis genes. GO/KEGG enrichment, correlation, and single-sample GSEA revealed associations with inflammation, oxidative stress, and immune pathways. WGCNA, LASSO, and SVM identified 5 hub genes, with RALB and SLC31A1 as key diagnostic markers. Validation in GSE103174 and GSE71220 showed combined AUC of 0.77 for RALB and SLC31A1.

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Publication Details

Journal
Journal of Clinical Personalized Medicine
Published
2025-01-01
DOI
https://doi.org/10.12677/jcpm.2025.43371
Primary Topic
Chronic Obstructive Pulmonary Disease (COPD) Research
Type
article
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article

Identification of Cuproptosis-Related Diagnostic Biomarkers in COPD by Intergrating Machine Learning and Bioinformatics

玮 赵
Journal of Clinical Personalized Medicine
Chronic Obstructive Pulmonary Disease (COPD) Research
article

Identification of Cuproptosis-Related Diagnostic Biomarkers in COPD by Intergrating Machine Learning and Bioinformatics

玮 赵
article en

Abstract

慢性阻塞性肺疾病(chronic obstructive pulmonary disease,COPD)作为全球主要致死疾病之一,与铜死亡密切相关。本研究旨在从铜死亡相关基因中筛选COPD诊断生物标志物。我们分析了来自GEO数据库的三个数据集(GSE106986、GSE103174、GSE71220)。在标准化及归一化后,基于文献中确定的铜死亡相关基因,我们在GSE106986中进行差异表达分析,识别出7个铜死亡相关差异表达基因及2个患者亚群(C1/C2)。通过GO和KEGG富集分析、相关性分析及单样本基因集富集分析,提示差异基因与炎症、氧化应激和免疫应答相关通路有关。进一步采用WGCNA、LASSO和SVM算法筛选出5个核心基因,其中RALB和SLC31A1为关键诊断标志物。在GSE103174和GSE71220中验证其诊断性能,ROC曲线显示RALB和SLC31A1联合AUC为0.77。Chronic obstructive pulmonary disease (COPD), a leading global cause of mortality, is closely linked to cuprotosis. This study aimed to identify diagnostic biomarkers for COPD from cuprotosis-related genes. Three GEO datasets (GSE106986, GSE103174, GSE71220) were analyzed. After normalization, differential expression analysis in GSE106986 identified 7 cuprotosis-related DEGs and 2 patient subgroups (C1/C2) using literature-curated cuprotosis genes. GO/KEGG enrichment, correlation, and single-sample GSEA revealed associations with inflammation, oxidative stress, and immune pathways. WGCNA, LASSO, and SVM identified 5 hub genes, with RALB and SLC31A1 as key diagnostic markers. Validation in GSE103174 and GSE71220 showed combined AUC of 0.77 for RALB and SLC31A1.

Journal of Clinical Personalized MedicineVol. 04(03)
Openalex Percentile: Top 78%
Chronic Obstructive Pulmonary Disease (COPD) Research
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Identification of Cuproptosis-Related Diagnostic Biomarkers in COPD by Intergrating Machine Learning and Bioinformatics — 玮 赵 · Journal of Clinical Personalized Medicine (2025) | TGRS Research Map | TGRS