Efficient iterative CRISPR/Cas9 editing using <i>sid-1</i> co-conversion and feeding RNAi in <i>Caenorhabditis elegans</i>

We present a sid-1 loss-of-function and restoration-of-function CRISPR/Cas9 co-conversion protocol in Caenorhabditis elegans. Introducing CRISPR reagents that induce sid-1 loss-of-function can produce survivors on lethal RNAi foods while reagents that induce sid-1 restoration-of-function can be screened for restoration of visible RNAi phenotypes. Both methods efficiently reduce the pool of candidates from hundreds or thousands of F1 progeny to tens with minimal experimenter effort. Furthermore, our optimized sid-1 CRISPR design allows a high ratio of CRISPR reagents targeting the gene of interest, maximizing successful co-conversion events. The interconvertibility of the sid-1 locus readily enables this strategy to be leveraged to iteratively create complex strains with multiple gene edits.

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Publication Details

Journal
G3 Genes Genomes Genetics
Published
2025-06-06
DOI
https://doi.org/10.1093/g3journal/jkaf128
Primary Topic
CRISPR and Genetic Engineering
Type
article
Field-Weighted Citation Impact
0.00

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article

Efficient iterative CRISPR/Cas9 editing using sid-1 co-conversion and feeding RNAi in Caenorhabditis elegans

Alexandra S. Weisman, N. Fisher, Craig P. Hunter
G3 Genes Genomes Genetics
CRISPR and Genetic Engineering
article

Efficient iterative CRISPR/Cas9 editing using sid-1 co-conversion and feeding RNAi in Caenorhabditis elegans

Alexandra S. Weisman, N. Fisher, Craig P. Hunter
article en

Abstract

We present a sid-1 loss-of-function and restoration-of-function CRISPR/Cas9 co-conversion protocol in Caenorhabditis elegans. Introducing CRISPR reagents that induce sid-1 loss-of-function can produce survivors on lethal RNAi foods while reagents that induce sid-1 restoration-of-function can be screened for restoration of visible RNAi phenotypes. Both methods efficiently reduce the pool of candidates from hundreds or thousands of F1 progeny to tens with minimal experimenter effort. Furthermore, our optimized sid-1 CRISPR design allows a high ratio of CRISPR reagents targeting the gene of interest, maximizing successful co-conversion events. The interconvertibility of the sid-1 locus readily enables this strategy to be leveraged to iteratively create complex strains with multiple gene edits.

G3 Genes Genomes GeneticsVol. 15(8)
Harvard University (US)
John Templeton Foundation, National Institutes of Health
Life in Land
Openalex Percentile: Top 88%
CRISPR and Genetic Engineering
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Efficient iterative CRISPR/Cas9 editing using <i>sid-1</i> co-conversion and feeding RNAi in <i>Caenorhabditis elegans</i> — Alexandra S. Weisman, N. Fisher, et al. · G3 Genes Genomes Genetics (2025) | TGRS Research Map | TGRS