Endogenous competition and the underrealized reproduction of infectious diseases

Scientific inquiry about the transmissibility of infectious diseases is largely based on the basic reproduction number ([Formula: see text]) and its derivations. This paper describes a mechanism overlooked in most conventional analyses, in which a disease can endogenously "compete" with itself when multiple infectious individuals race to infect the same susceptible individual, thereby reducing the effective reproductive rate. Utilizing an empirically calibrated network epidemiological model of wild-type COVID-19 diffusion in its early pandemic, we show that the mechanism would be expected to reduce its reproductive rate by an average of 39%. Simulation experiments further identify different types of endogenous competition mechanisms and their relative effect sizes. We highlight the incorporation of endogenous competition mechanism as a necessary step in realistically modeling the reproduction process of infectious diseases.

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Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2025-06-06
DOI
https://doi.org/10.1073/pnas.2502676122
Primary Topic
COVID-19 epidemiological studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Endogenous competition and the underrealized reproduction of infectious diseases

Zack W. Almquist, Carter T. Butts, Peng Huang
Proceedings of the National Academy of Sciences
COVID-19 epidemiological studies
article

Endogenous competition and the underrealized reproduction of infectious diseases

Zack W. Almquist, Carter T. Butts, Peng Huang
article en

Abstract

Scientific inquiry about the transmissibility of infectious diseases is largely based on the basic reproduction number ([Formula: see text]) and its derivations. This paper describes a mechanism overlooked in most conventional analyses, in which a disease can endogenously "compete" with itself when multiple infectious individuals race to infect the same susceptible individual, thereby reducing the effective reproductive rate. Utilizing an empirically calibrated network epidemiological model of wild-type COVID-19 diffusion in its early pandemic, we show that the mechanism would be expected to reduce its reproductive rate by an average of 39%. Simulation experiments further identify different types of endogenous competition mechanisms and their relative effect sizes. We highlight the incorporation of endogenous competition mechanism as a necessary step in realistically modeling the reproduction process of infectious diseases.

Proceedings of the National Academy of SciencesVol. 122(23)
University of Georgia (US), University of Washington (US), University of California, Irvine (US), University of California System (US)
University of Washington, National Institutes of Health
Good health and well-being
Openalex Percentile: Top 85%
COVID-19 epidemiological studies
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Endogenous competition and the underrealized reproduction of infectious diseases — Zack W. Almquist, Carter T. Butts, et al. · Proceedings of the National Academy of Sciences (2025) | TGRS Research Map | TGRS