BMPCD: A Pan-Cancer Detection Method Base on Learning Cross-Domain Feature

The microbiome has emerged as a predictor of several diseases.Increasing evidence suggests that the tumor microbiome is involved in cancer growth.Additionally, host information like physiological characteristics can alter the structure of the microbiome, but this information has not yet been fully utilized in data models.Language representation models have gained widespread attention in the field of natural language processing (NLP), owing to their remarkable effectiveness.In this study, we propose a novel approach that uses the BERT model to extract features from textual host information and then incorporates them into microbiome-based modeling.The experimental results showed that when only the microbiome was used, the AUROC values were lower, but the performance of the cancer screening model could be significantly improved with embedding host information.

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Published
2024-11-28
DOI
https://doi.org/10.1145/3715020.3715056
Primary Topic
COVID-19 diagnosis using AI
Type
article
Field-Weighted Citation Impact
0.00

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article

BMPCD: A Pan-Cancer Detection Method Base on Learning Cross-Domain Feature

Shankai Yan, Feifei Cui, Zilong Zhang, Xin Yang et al.
COVID-19 diagnosis using AI
article

BMPCD: A Pan-Cancer Detection Method Base on Learning Cross-Domain Feature

Shankai Yan, Feifei Cui, Zilong Zhang, Xin Yang, Dongmei He
article en

Abstract

The microbiome has emerged as a predictor of several diseases.Increasing evidence suggests that the tumor microbiome is involved in cancer growth.Additionally, host information like physiological characteristics can alter the structure of the microbiome, but this information has not yet been fully utilized in data models.Language representation models have gained widespread attention in the field of natural language processing (NLP), owing to their remarkable effectiveness.In this study, we propose a novel approach that uses the BERT model to extract features from textual host information and then incorporates them into microbiome-based modeling.The experimental results showed that when only the microbiome was used, the AUROC values were lower, but the performance of the cancer screening model could be significantly improved with embedding host information.

Hainan University (CN)
National Natural Science Foundation of China, Hainan University
Good health and well-being
Openalex Percentile: Top 55%
COVID-19 diagnosis using AI
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BMPCD: A Pan-Cancer Detection Method Base on Learning Cross-Domain Feature — Shankai Yan, Feifei Cui, et al. · (2024) | TGRS Research Map | TGRS