Realizing mechanical frustration at the nanoscale using DNA origami

Structural designs inspired by physical and biological systems have been previously utilized to develop mechanical metamaterials with enhanced properties based on clever geometric arrangement of constituent building blocks. Here, we use the DNA origami method to realize a nanoscale metastructure exhibiting mechanical frustration, a counterpart of the well-known phenomenon of magnetic frustration. By selectively actuating reconfigurable struts, it adopts either frustrated or non-frustrated states, each characterized by distinct free energy profiles. While the non-frustrated state distributes the strain homogeneously, the frustrated mode concentrates it at a specific location. Molecular dynamics simulations reconcile the contrasting behaviors and provide insights into underlying mechanics. We explore the design space further by tailoring responses through structural modifications. Our work combines programmable DNA self-assembly with mechanical design principles to overcome engineering limitations encountered at the macroscale to design dynamic, deformable nanostructures with potential applications in elastic energy storage, nanomechanical computation, and allosteric mechanisms in DNA-based nanomachinery.

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Publication Details

Journal
Nature Communications
Published
2025-06-03
DOI
https://doi.org/10.1038/s41467-025-60492-z
Citations
6
Primary Topic
Advanced biosensing and bioanalysis techniques
Type
article
Field-Weighted Citation Impact
4.84

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Realizing mechanical frustration at the nanoscale using DNA origami

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Nature Communications
Advanced biosensing and bioanalysis techniques
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article

Realizing mechanical frustration at the nanoscale using DNA origami

Yancheng Du, Anirudh Sampath Madhvacharyula, Seongmin Seo, Jong Hyun Choi, Friedrich C. Simmel, Alexander A. Swett, Ruixin Li
article en
6 citations

Abstract

Structural designs inspired by physical and biological systems have been previously utilized to develop mechanical metamaterials with enhanced properties based on clever geometric arrangement of constituent building blocks. Here, we use the DNA origami method to realize a nanoscale metastructure exhibiting mechanical frustration, a counterpart of the well-known phenomenon of magnetic frustration. By selectively actuating reconfigurable struts, it adopts either frustrated or non-frustrated states, each characterized by distinct free energy profiles. While the non-frustrated state distributes the strain homogeneously, the frustrated mode concentrates it at a specific location. Molecular dynamics simulations reconcile the contrasting behaviors and provide insights into underlying mechanics. We explore the design space further by tailoring responses through structural modifications. Our work combines programmable DNA self-assembly with mechanical design principles to overcome engineering limitations encountered at the macroscale to design dynamic, deformable nanostructures with potential applications in elastic energy storage, nanomechanical computation, and allosteric mechanisms in DNA-based nanomachinery.

Nature CommunicationsVol. 16(1)
Purdue University West Lafayette (US), Technical University of Munich (DE)
U.S. Department of Energy, Alexander von Humboldt-Stiftung, Purdue University, Arizona State University, Office of Science, Basic Energy Sciences
Openalex Percentile: Top 5%
Advanced biosensing and bioanalysis techniques
4.84
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