biogrowleR: Enhancing Longitudinal Data Analysis

Time course measurements are used for many applications in biomedical research, ranging from growth curves to drug efficacy testing and high-throughput screening. Statistical methods used to analyze the resulting longitudinal data, such as t-tests or repeated measures ANOVA have limitations when groups are unbalanced, or individual measurements are missing. To address these issues we developed biogrowleR ( https://upbri.gitlab.io/biogrowleR/ ), a workflow to visualize and analyze data based on Frequentist and Bayesian inference combined with hierarchical modeling. By focusing on effect sizes we enhance data interpretation. The workflow further includes a randomization algorithm important to reduce numbers of experimental animals (RRR) and costs. The workflow and R package were designed to be used by researchers with limited experience in R and biostatistics. Our open-source R package biogrowleR contains tutorials, pipelines, and helper functions for the analysis of longitudinal data and enables non computational scientists to perform more effective data analysis.

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Publication Details

Journal
Journal of Mammary Gland Biology and Neoplasia
Published
2025-06-03
DOI
https://doi.org/10.1007/s10911-025-09583-7
Citations
1
Primary Topic
Data Analysis with R
Type
article
Field-Weighted Citation Impact
2.48

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article

biogrowleR: Enhancing Longitudinal Data Analysis

Hazel M. Quinn, Francis M. Hughes, Daria Matvienko, Carlos Ronchi et al.
1 citations
Journal of Mammary Gland Biology and Neoplasia
Data Analysis with R
2.48
article

biogrowleR: Enhancing Longitudinal Data Analysis

Hazel M. Quinn, Francis M. Hughes, Daria Matvienko, Carlos Ronchi, Andrea Agnoletto, Giovanna Ambrosini, Cathrin Brisken, Renée L. Flaherty
article en
1 citations

Abstract

Time course measurements are used for many applications in biomedical research, ranging from growth curves to drug efficacy testing and high-throughput screening. Statistical methods used to analyze the resulting longitudinal data, such as t-tests or repeated measures ANOVA have limitations when groups are unbalanced, or individual measurements are missing. To address these issues we developed biogrowleR ( https://upbri.gitlab.io/biogrowleR/ ), a workflow to visualize and analyze data based on Frequentist and Bayesian inference combined with hierarchical modeling. By focusing on effect sizes we enhance data interpretation. The workflow further includes a randomization algorithm important to reduce numbers of experimental animals (RRR) and costs. The workflow and R package were designed to be used by researchers with limited experience in R and biostatistics. Our open-source R package biogrowleR contains tutorials, pipelines, and helper functions for the analysis of longitudinal data and enables non computational scientists to perform more effective data analysis.

Journal of Mammary Gland Biology and NeoplasiaVol. 30(1)
Institute of Cancer Research (GB), Breast Cancer Now (GB), École Polytechnique Fédérale de Lausanne (CH), University of Lausanne (CH)
Biltema Foundation, European Commission, École Polytechnique Fédérale de Lausanne, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Fondation ISREC, Horizon 2020 Framework Programme
Openalex Percentile: Top 10%
Data Analysis with R
2.48
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