biogrowleR: Enhancing Longitudinal Data Analysis
Time course measurements are used for many applications in biomedical research, ranging from growth curves to drug efficacy testing and high-throughput screening. Statistical methods used to analyze the resulting longitudinal data, such as t-tests or repeated measures ANOVA have limitations when groups are unbalanced, or individual measurements are missing. To address these issues we developed biogrowleR ( https://upbri.gitlab.io/biogrowleR/ ), a workflow to visualize and analyze data based on Frequentist and Bayesian inference combined with hierarchical modeling. By focusing on effect sizes we enhance data interpretation. The workflow further includes a randomization algorithm important to reduce numbers of experimental animals (RRR) and costs. The workflow and R package were designed to be used by researchers with limited experience in R and biostatistics. Our open-source R package biogrowleR contains tutorials, pipelines, and helper functions for the analysis of longitudinal data and enables non computational scientists to perform more effective data analysis.
Authors
- Hazel M. Quinn (ORCID: https://orcid.org/0000-0002-1336-5709)
- Francis M. Hughes (ORCID: https://orcid.org/0000-0003-3776-3653)
- Daria Matvienko
- Carlos Ronchi (ORCID: https://orcid.org/0000-0002-8079-8643)
- Andrea Agnoletto (ORCID: https://orcid.org/0000-0003-1223-5619)
- Giovanna Ambrosini (ORCID: https://orcid.org/0000-0003-1294-6541)
- Cathrin Brisken (ORCID: https://orcid.org/0000-0002-6857-3230)
- Renée L. Flaherty (ORCID: https://orcid.org/0000-0001-5260-965X)
Institutions
- Institute of Cancer Research (GB)
- Breast Cancer Now (GB)
- École Polytechnique Fédérale de Lausanne (CH)
- University of Lausanne (CH)
Publication Details
- Journal
- Journal of Mammary Gland Biology and Neoplasia
- Published
- 2025-06-03
- DOI
- https://doi.org/10.1007/s10911-025-09583-7
- Citations
- 1
- Primary Topic
- Data Analysis with R
- Type
- article
- Field-Weighted Citation Impact
- 2.48
Funders
- Biltema Foundation
- European Commission
- École Polytechnique Fédérale de Lausanne
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
- Fondation ISREC
- Horizon 2020 Framework Programme