Historical DNA Places an Apparently Extinct Gladiator Frog in the Phylogeny of the Boana pulchella Group (Anura: Hylidae)

Boana cymbalum has not been collected for the past six decades and is one of the two species of Brazilian frogs formally considered to be extinct. It is also the only species of the B. pulchella group that has never been included in molecular phylogenetic analyses, because no fresh tissue is available. Using specialized historical DNA (hDNA) extraction protocols and high-throughput sequencing, we obtained mitochondrial and nuclear sequences from the 62-yr-old holotype of B. cymbalum. Our results place B. cymbalum as the sister taxon of the clade formed by B. prasina, B. cordobae, and B. pulchella, supporting its inclusion in the B. prasina clade. The scars on the dorsum of adult males suggest male–male combat. Microcomputed tomography revealed the presence of a large postarticular process and a distal prepollex directed laterad to pass ventral to Metacarpal II, two known synapomorphies of the B. pulchella group. On the basis of recordings from 1963, we provide an expanded description of the vocalization of B. cymbalum, consisting of a short, tonal note (Note A) and a longer, multipulsed note (Note B). Finally, we discuss the conservation status of B. cymbalum and the potential application of the newly generated hDNA sequences to screen water bodies near the type locality using environmental DNA in an effort to rediscover this species.

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Publication Details

Journal
Herpetologica
Published
2025-04-02
DOI
https://doi.org/10.1655/herpetologica-d-24-00036
Citations
1
Primary Topic
Amphibian and Reptile Biology
Type
article
Field-Weighted Citation Impact
1.11
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article

Historical DNA Places an Apparently Extinct Gladiator Frog in the Phylogeny of the Boana pulchella Group (Anura: Hylidae)

Paulo D. P. Pinheiro, Daniel Yudi Miyahara Nakamura, Julián Faivovich, Taran Grant et al.
1 citations
Herpetologica
Amphibian and Reptile Biology
1.11
article

Historical DNA Places an Apparently Extinct Gladiator Frog in the Phylogeny of the Boana pulchella Group (Anura: Hylidae)

Paulo D. P. Pinheiro, Daniel Yudi Miyahara Nakamura, Julián Faivovich, Taran Grant, Mariana L. Lyra
article en
1 citations

Abstract

Boana cymbalum has not been collected for the past six decades and is one of the two species of Brazilian frogs formally considered to be extinct. It is also the only species of the B. pulchella group that has never been included in molecular phylogenetic analyses, because no fresh tissue is available. Using specialized historical DNA (hDNA) extraction protocols and high-throughput sequencing, we obtained mitochondrial and nuclear sequences from the 62-yr-old holotype of B. cymbalum. Our results place B. cymbalum as the sister taxon of the clade formed by B. prasina, B. cordobae, and B. pulchella, supporting its inclusion in the B. prasina clade. The scars on the dorsum of adult males suggest male–male combat. Microcomputed tomography revealed the presence of a large postarticular process and a distal prepollex directed laterad to pass ventral to Metacarpal II, two known synapomorphies of the B. pulchella group. On the basis of recordings from 1963, we provide an expanded description of the vocalization of B. cymbalum, consisting of a short, tonal note (Note A) and a longer, multipulsed note (Note B). Finally, we discuss the conservation status of B. cymbalum and the potential application of the newly generated hDNA sequences to screen water bodies near the type locality using environmental DNA in an effort to rediscover this species.

HerpetologicaVol. 81(2)
Smithsonian Institution (US), New York University Abu Dhabi (AE), National Museum of Natural History (US), Consejo Nacional de Investigaciones Científicas y Técnicas (AR), Universidade de São Paulo (BR), Bernardino Rivadavia Natural Sciences Museum (AR)
Openalex Percentile: Top 24%
Amphibian and Reptile Biology
1.11
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