Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy

It is shown that regularizing the signal gradient statistics during training of deep-learning models of super-resolution fluorescence microscopy improves the generated images. Specifically, regularizing the images in the training data set is proposed to have gradient and Laplacian statistics closer to those expected for natural-scene images. The BioSR data set of matched pairs of diffraction-limited and super-resolution images is used to evaluate the proposed regularization in a state-of-the-art generative deep-learning model of super-resolution microscopy, the Conditional Variational Diffusion Model (CVDM). Since the proposed regularization is applied as a preprocessing step to the training data, it can be used in conjunction with any supervised machine-learning model. However, its utility is limited to images for which the prior is appropriate, which in the BioSR data set are the images of filamentous structures. The quality and generalization power of CVDM trained with and without the proposed regularization are compared, showing that the new prior yields images with clearer visual detail and better small-scale structure.

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Publication Details

Journal
Small Methods
Published
2025-06-02
DOI
https://doi.org/10.1002/smtd.202401900
Primary Topic
Advanced Fluorescence Microscopy Techniques
Type
article
Field-Weighted Citation Impact
0.00

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article

Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy

Nandu Gopan, Gabriel della Maggiora, Xiangbo Cui, Artur Yakimovich et al.
Small Methods
Advanced Fluorescence Microscopy Techniques
article

Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy

Nandu Gopan, Gabriel della Maggiora, Xiangbo Cui, Artur Yakimovich, Ivo F. Sbalzarini, Meri Abgaryan
article en

Abstract

It is shown that regularizing the signal gradient statistics during training of deep-learning models of super-resolution fluorescence microscopy improves the generated images. Specifically, regularizing the images in the training data set is proposed to have gradient and Laplacian statistics closer to those expected for natural-scene images. The BioSR data set of matched pairs of diffraction-limited and super-resolution images is used to evaluate the proposed regularization in a state-of-the-art generative deep-learning model of super-resolution microscopy, the Conditional Variational Diffusion Model (CVDM). Since the proposed regularization is applied as a preprocessing step to the training data, it can be used in conjunction with any supervised machine-learning model. However, its utility is limited to images for which the prior is appropriate, which in the BioSR data set are the images of filamentous structures. The quality and generalization power of CVDM trained with and without the proposed regularization are compared, showing that the new prior yields images with clearer visual detail and better small-scale structure.

Small MethodsVol. 9(7)
University of Wrocław (PL), Helmholtz-Zentrum Dresden-Rossendorf (DE), Institute of Computer Science (PL), Center for Advanced Systems Understanding (DE), Center for Systems Biology Dresden (DE), Max Planck Institute of Molecular Cell Biology and Genetics (DE), Artificial Intelligence in Medicine (Canada) (CA), Hochschule für Technik und Wirtschaft Dresden – University of Applied Sciences (DE), Technical University of Munich (DE), Technische Universität Dresden (DE)
Bundesministerium für Bildung und Forschung
Openalex Percentile: Top 90%
Advanced Fluorescence Microscopy Techniques
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