Competition Between Intermolecular Interactions in the Self-Assembly of Cocrystals of Polyfluorinated Arylenediamines with Crown Ethers: Effect of the Cyano Group

2,4-Diamino-3,5,6-trifluorobenzonitrile makes cocrystals with macrocyclic 18-crown-6, 15-crown-5, and 12-crown-4 ethers of 4:3, 1:1, and 2:1 stoichiometries respectively. The inability to 1:1 cocrystallization with 18-crown-6 and a nonmonotonic change in the diamine fraction in the cocrystal when the macrocycle size changes distinguish it from a series of structurally similar polyfluoroarylenediamines. In all cocrystals synthesized the cyano group and the polyfluoroaromatic moiety participate in structure-forming interactions (N–H⋯Ncyano H-bond, π⋯π and p⋯π contacts) supplementing the N–H⋯Ocr H-bond with crown ether. Quantum chemical DFT computations of the molecular electrostatic potential, binding energies, and topological parameters of the electron density in dimers show a considerable contribution of interactions between aromatic coformer molecules to stabilization of the cocrystal structure. The key factor providing the 1:1 cocrystallization is π-stacking occurring in the cocrystal with 15-crown-5 and is violated when passing to 18-crown-6 due to an increase in the macrocycle size. The structural and quantum chemical analysis performed characterizes the hierarchy of supramolecular synthons as tools to design molecular crystals.

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Journal
Journal of Structural Chemistry
Published
2025-05-01
DOI
https://doi.org/10.1134/s0022476625050154
Primary Topic
Crystallography and molecular interactions
Type
article
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article

Competition Between Intermolecular Interactions in the Self-Assembly of Cocrystals of Polyfluorinated Arylenediamines with Crown Ethers: Effect of the Cyano Group

N. A. Kryuchkova, Yu. V. Gatilov, Evgenij V. Malykhin, Denis P. Pishchur et al.
Journal of Structural Chemistry
Crystallography and molecular interactions
article

Competition Between Intermolecular Interactions in the Self-Assembly of Cocrystals of Polyfluorinated Arylenediamines with Crown Ethers: Effect of the Cyano Group

N. A. Kryuchkova, Yu. V. Gatilov, Evgenij V. Malykhin, Denis P. Pishchur, Tamara A. Vaganova
article en

Abstract

2,4-Diamino-3,5,6-trifluorobenzonitrile makes cocrystals with macrocyclic 18-crown-6, 15-crown-5, and 12-crown-4 ethers of 4:3, 1:1, and 2:1 stoichiometries respectively. The inability to 1:1 cocrystallization with 18-crown-6 and a nonmonotonic change in the diamine fraction in the cocrystal when the macrocycle size changes distinguish it from a series of structurally similar polyfluoroarylenediamines. In all cocrystals synthesized the cyano group and the polyfluoroaromatic moiety participate in structure-forming interactions (N–H⋯Ncyano H-bond, π⋯π and p⋯π contacts) supplementing the N–H⋯Ocr H-bond with crown ether. Quantum chemical DFT computations of the molecular electrostatic potential, binding energies, and topological parameters of the electron density in dimers show a considerable contribution of interactions between aromatic coformer molecules to stabilization of the cocrystal structure. The key factor providing the 1:1 cocrystallization is π-stacking occurring in the cocrystal with 15-crown-5 and is violated when passing to 18-crown-6 due to an increase in the macrocycle size. The structural and quantum chemical analysis performed characterizes the hierarchy of supramolecular synthons as tools to design molecular crystals.

Journal of Structural ChemistryVol. 66(5)
Novosibirsk Institute of Organic Chemistry (RU), Nikolaev Institute of Inorganic Chemistry (RU)
Openalex Percentile: Top 87%
Crystallography and molecular interactions
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Competition Between Intermolecular Interactions in the Self-Assembly of Cocrystals of Polyfluorinated Arylenediamines with Crown Ethers: Effect of the Cyano Group — N. A. Kryuchkova, Yu. V. Gatilov, et al. · Journal of Structural Chemistry (2025) | TGRS Research Map | TGRS