Transcriptome and Metabolome Analyses of the Salt Stress Response Mechanism in Lonicera caerulea

<i>Lonicera caerulea</i> is a wild fruit species with high edible and medicinal value. However, the molecular regulation and metabolic mechanisms of <i>L. caerulea</i> under salt stress are still unclear. Salt stress causes damage to the cell membrane of <i>L. caerulea</i> and induces changes in malondialdehyde content, relative electrolyte leakage, leaves' stomatal opening, and the water loss rate. It also increases the activity of antioxidant enzymes and the content of soluble sugars. A comprehensive transcriptomic and metabolomic analysis of <i>L. caerulea</i> exposed to salt stress at four different (treatment) time intervals yielded a total of 99,574 unigenes and 1375 metabolites. Among these, 4081, 4042, and 4403 differentially expressed genes (DEGs) were identified in 12 transcriptomes, while 776, 832, and 793 differentially accumulated metabolites (DAMs) were detected in 12 metabolomes. The DEGs play important roles in several signaling pathways, including MAPK signaling, fatty acid metabolism, starch and sucrose metabolism, phenylpropanoid biosynthesis, and plant hormone signal transduction. KEGG pathway enrichment analysis revealed that these DEGs and DAMs are associated with flavonoid and lipid biosynthesis pathways. The combined transcriptomic and metabolomic analyses suggest that flavonoid and fatty acid compounds may be involved in regulating plant responses to salt stress. These findings will lay the foundation for the selection of <i>L. caerulea</i> germplasm resources and the expansion of its cultivation area. These research findings will lay the foundation for the cultivation of salt-tolerant new varieties of <i>L. caerulea</i> and their planting in saline-alkali soils.