Bioinformatic analysis of the regulatory potential of tagging SNPs provides evidence of the involvement of genes encoding the heat-resistant obscure (Hero) proteins in the pathogenesis of cardiovascular diseases

Although multiple aspects of molecular pathology underlying cardiovascular diseases (CVDs) have been revealed, the complete picture has yet to be elucidated. In this respect, annotation of the novel links between genes and atherosclerosis is of great importance for cardiovascular medicine. Aligning with our previous research, we aimed to analyze the cardiovascular predisposition contribution of the genes encoding Hero-proteins, polypeptides with chaperone activity. Following bioinformatic sources were utilized to annotate data regarding the cardiovascular contribution of Hero-proteins and their genes: SNPinfo Web Server, The Cardiovascular Disease Knowledge Portal, GTEx Portal, HaploReg, rSNPBase, RegulomeDB, atSNP, Gene Ontology, QTLbase, and the Blood eQTL browser. Almost all analyzed genes were characterized by a very high regulatory potential of tag SNPs (except <i>BEX3</i>). Multiple substantial impacts of the analyzed SNPs on histone modifications, eQTL effects on CVD-related genes, and binding to transcription factors involved in biological processes pathogenetically significant for CVDs have been discovered. Here we provide <i>in silico</i> evidence of the involvement of genes <i>C9orf16 (BBLN)</i>, <i>C11orf58</i>, <i>SERBP1</i>, <i>SERF2</i>, and <i>C19orf53</i> in CVDs and their risk factors (high blood pressure, dyslipidemia, obesity, arrhythmias, etc.), thus revealing Hero-proteins as putative actors in the pathobiology of the heart and vessels.

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Journal
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
Published
2025-03-01
DOI
https://doi.org/10.1515/jib-2024-0043
Primary Topic
Heat shock proteins research
Type
article
Field-Weighted Citation Impact
0.00

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article

Bioinformatic analysis of the regulatory potential of tagging SNPs provides evidence of the involvement of genes encoding the heat-resistant obscure (Hero) proteins in the pathogenesis of cardiovascular diseases

Ksenia Kobzeva, Olga Bushueva, Yuriy L. Orlov, Vladislav O. Soldatov et al.
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
Heat shock proteins research
article

Bioinformatic analysis of the regulatory potential of tagging SNPs provides evidence of the involvement of genes encoding the heat-resistant obscure (Hero) proteins in the pathogenesis of cardiovascular diseases

Ksenia Kobzeva, Olga Bushueva, Yuriy L. Orlov, Vladislav O. Soldatov, Alexey V. Deykin, V. N. Shilenok, Irina Shilenok
article en

Abstract

Although multiple aspects of molecular pathology underlying cardiovascular diseases (CVDs) have been revealed, the complete picture has yet to be elucidated. In this respect, annotation of the novel links between genes and atherosclerosis is of great importance for cardiovascular medicine. Aligning with our previous research, we aimed to analyze the cardiovascular predisposition contribution of the genes encoding Hero-proteins, polypeptides with chaperone activity. Following bioinformatic sources were utilized to annotate data regarding the cardiovascular contribution of Hero-proteins and their genes: SNPinfo Web Server, The Cardiovascular Disease Knowledge Portal, GTEx Portal, HaploReg, rSNPBase, RegulomeDB, atSNP, Gene Ontology, QTLbase, and the Blood eQTL browser. Almost all analyzed genes were characterized by a very high regulatory potential of tag SNPs (except <i>BEX3</i>). Multiple substantial impacts of the analyzed SNPs on histone modifications, eQTL effects on CVD-related genes, and binding to transcription factors involved in biological processes pathogenetically significant for CVDs have been discovered. Here we provide <i>in silico</i> evidence of the involvement of genes <i>C9orf16 (BBLN)</i>, <i>C11orf58</i>, <i>SERBP1</i>, <i>SERF2</i>, and <i>C19orf53</i> in CVDs and their risk factors (high blood pressure, dyslipidemia, obesity, arrhythmias, etc.), thus revealing Hero-proteins as putative actors in the pathobiology of the heart and vessels.

Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformaticsVol. 22(1)
Belgorod National Research University (RU), Peoples' Friendship University of Russia (RU), Sechenov University (RU), Kursk Regional Clinical Oncology Center (RU), Kursk State Medical University (RU)
Russian Science Foundation
Good health and well-being
Openalex Percentile: Top 89%
Heat shock proteins research
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