Development of a nonreplicative phage-based DNA delivery system and its application to antimicrobial therapies
Phage therapy has emerged as a promising alternative to conventional antimicrobial therapy for antimicrobial-resistant bacterial infections, but concerns about uncontrolled phage proliferation have limited its use. To address this issue, we established a nonproliferative phage-based DNA delivery system, called bacteria-targeting capsid particle (B-CAP), for the development of antimicrobial agents which effectively prevented phage spread while maintaining bactericidal activity. B-CAP is principally a T7 phage capsids packaged with a partial T7 phage genome, giving it the allowance to accommodate large foreign DNA up to 18 kb in length. We confirmed the efficacy of B-CAP in targeting and injecting its genome into bacteria, analogous to the wild-type phage. To demonstrate proof-of-concept and potential for developing an antimicrobial agent, we loaded colicin E1 operon onto the B-CAP system, resulting in the construction of B-CAP_ColE1, an antimicrobial agent capable of boosting colicin E1-based bacterial killing against Escherichia <i>coli</i>. Although no therapeutic effect was observed for B-CAP, B-CAP_ColE1 exhibited strong bactericidal activity against carbapenem-resistant <i>E. coli</i> both in vitro and in vivo, and significantly improved the survival of mice in an infection mouse model experiment. Finally, B-CAP_ColE1 is biologically contained or inert, reducing potential biological hazards during therapeutic use. Our results demonstrate that the B-CAP system offers a new strategy for developing nonreplicative phage-based antimicrobial agents against bacterial infections.
Authors
- Yusuke Sato’o (ORCID: https://orcid.org/0009-0008-3349-4154)
- Kotaro Kiga (ORCID: https://orcid.org/0000-0002-0248-6951)
- Yoshimasa Takahashi (ORCID: https://orcid.org/0000-0001-6342-4087)
- Ryo Kinoshita-Daitoku
- Azumi Tamura (ORCID: https://orcid.org/0000-0001-7622-7728)
- Teppei Sasahara (ORCID: https://orcid.org/0000-0002-5961-159X)
- Srivani Veeranarayanan (ORCID: https://orcid.org/0000-0001-5358-5039)
- Shinjiro Ojima
- Longzhu Cui (ORCID: https://orcid.org/0000-0002-8909-3885)
- Huong Minh Nguyen (ORCID: https://orcid.org/0000-0001-5302-2973)
- Yoshifumi Aiba
- Wakana Yamashita
- Aa Haeruman Azam (ORCID: https://orcid.org/0000-0001-6350-7683)
- Fengyu Li (ORCID: https://orcid.org/0000-0002-9483-8554)
- Yutaro Nishikawa
- Xin-Ee Tan (ORCID: https://orcid.org/0000-0001-7847-2583)
- Koichi Watashi (ORCID: https://orcid.org/0000-0002-4536-9966)
- Kanate Thitiananpakorn
- Kazuhiko Miyanaga (ORCID: https://orcid.org/0000-0002-3483-9491)
- Shinya Watanabe (ORCID: https://orcid.org/0000-0003-3932-8575)
- Kohei Kondo (ORCID: https://orcid.org/0009-0006-6451-2728)
- Tomohiro Nakamura
- Tomofumi Kawaguchi
Institutions
- Jichi Medical University (JP)
- National Institute of Infectious Diseases (JP)
- Nagoya University (JP)
Publication Details
- Journal
- PNAS Nexus
- Published
- 2025-05-31
- DOI
- https://doi.org/10.1093/pnasnexus/pgaf176
- Citations
- 3
- Primary Topic
- Bacteriophages and microbial interactions
- Type
- article
- Field-Weighted Citation Impact
- 5.15
Funders
- Japan Agency for Medical Research and Development
- Jichi Medical University
- Japan Society for the Promotion of Science
- Moonshot Research and Development Program