Rise of Ketone α-Hydrolysis: Revisiting S<sub>N</sub>Acyl, E1cB Mechanisms and Carbon-Based Leaving Groups in One Reaction for Drug-Targeting Applications

Nucleophilic substitution of carbon-leaving groups (CLGs) and base-catalyzed alcohol dehydration reactions are rare in the organic chemistry literature. Herein, we introduce an unprecedented example of a novel reaction that challenges the poor leaving group abilities of both CLGs and hydroxide ions via a concerted transition state, demonstrating E1cB<sub>anion</sub> step-2/S<sub>N</sub>Acyl step-1 reaction mechanism interference, displayed by <b>S1</b> and <b>S2</b> scaffolds in an alkaline medium (Schemes 5,8). The work offers swift access to C-C bond hydrolysis in the form of ketone α-hydrolytic cleavage under environmentally convenient conditions. Three reaction products were characterized by single-crystal X-ray crystallography, which supported their computed most stable ring conformer structures. Experimental and DFT evidence evoke fast reaction rates (<b>TS1'</b>, Δ<i>G</i><sup>‡</sup> = 26.8 kcal/mol, Scheme 5 and <b>TS5b</b>, Δ<i>G</i><sup>‡</sup> = 14.9 kcal/mol, Scheme 8). Given the synthetic tunability and the reported anticancer activity of <b>S2</b> (via CDK2 inhibition), we introduce application inspirations, utilizing prodrug strategy, to load a biotargeting molecule on <b>S2</b> and employ the newly discovered reaction in the bioactivation mechanism. Furthermore, the <b>S1</b> scaffold offers two covalent derivatization sites that would allow for the sequential biorelease of a C2-linked biotargeting molecule and then a C4-linked drug, in a <b>TS1'</b>-like rate-limiting step, within the designed glutathione-induced prodrug bioactivation mechanism (Scheme 9).

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Journal
The Journal of Organic Chemistry
Published
2025-05-30
DOI
https://doi.org/10.1021/acs.joc.5c00161
Citations
3
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
2.42

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article

Rise of Ketone α-Hydrolysis: Revisiting SNAcyl, E1cB Mechanisms and Carbon-Based Leaving Groups in One Reaction for Drug-Targeting Applications

Omaima F. Ibrahim, Shaaban K. Mohamed, Islam S. Marae, Etify A. Bakhite et al.
3 citations
The Journal of Organic Chemistry
Protein Structure and Dynamics
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article

Rise of Ketone α-Hydrolysis: Revisiting SNAcyl, E1cB Mechanisms and Carbon-Based Leaving Groups in One Reaction for Drug-Targeting Applications

Omaima F. Ibrahim, Shaaban K. Mohamed, Islam S. Marae, Etify A. Bakhite, Walid Sharmoukh, Raed M. Maklad
article en
3 citations

Abstract

Nucleophilic substitution of carbon-leaving groups (CLGs) and base-catalyzed alcohol dehydration reactions are rare in the organic chemistry literature. Herein, we introduce an unprecedented example of a novel reaction that challenges the poor leaving group abilities of both CLGs and hydroxide ions via a concerted transition state, demonstrating E1cB<sub>anion</sub> step-2/S<sub>N</sub>Acyl step-1 reaction mechanism interference, displayed by <b>S1</b> and <b>S2</b> scaffolds in an alkaline medium (Schemes 5,8). The work offers swift access to C-C bond hydrolysis in the form of ketone α-hydrolytic cleavage under environmentally convenient conditions. Three reaction products were characterized by single-crystal X-ray crystallography, which supported their computed most stable ring conformer structures. Experimental and DFT evidence evoke fast reaction rates (<b>TS1'</b>, Δ<i>G</i><sup>‡</sup> = 26.8 kcal/mol, Scheme 5 and <b>TS5b</b>, Δ<i>G</i><sup>‡</sup> = 14.9 kcal/mol, Scheme 8). Given the synthetic tunability and the reported anticancer activity of <b>S2</b> (via CDK2 inhibition), we introduce application inspirations, utilizing prodrug strategy, to load a biotargeting molecule on <b>S2</b> and employ the newly discovered reaction in the bioactivation mechanism. Furthermore, the <b>S1</b> scaffold offers two covalent derivatization sites that would allow for the sequential biorelease of a C2-linked biotargeting molecule and then a C4-linked drug, in a <b>TS1'</b>-like rate-limiting step, within the designed glutathione-induced prodrug bioactivation mechanism (Scheme 9).

The Journal of Organic ChemistryVol. 90(23)
University of Technology Sydney (AU), Manchester Metropolitan University (GB), The University of Sydney (AU), Kafrelsheikh University (EG), Physical Sciences (United States) (US), National Research Centre (EG), Assiut University (EG)
Science and Technology Development Fund
Openalex Percentile: Top 11%
Protein Structure and Dynamics
2.42
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