Artificial Intelligence-Enhanced Detection of Biogenicity Using Laboratory Specimens of Biologically and Microbially Induced Sedimentary Structures in a Controlled Experiment

The search for traces of life can be based on the detection of specific signatures produced by microorganisms on sedimentary rocks. Microbially induced sedimentary structures (MISSs) develop under specific physicochemical conditions that are likely to have potentially existed on Mars during the Noachian period. We designed an experiment under controlled laboratory conditions to explore the wide range variability in biogeomorphological responses of clay-sand substrates to the development of biological mats-including microbial mats-of different strains and biomasses, and an abiotic control. A 3D picture dataset based on the experiment was built using multi-image photogrammetry. Visual observations were combined with multivariate statistics on computed topographical variables to interpret the diversity in the resulting biotic and abiotic mud cracks. Finally, an artificial intelligence (AI) classifier based on convolutional neural networks was trained with the data. The resulting model predicted accurately not only the biotic-abiotic differences but also the differences between strains and biomasses of biotic treatments. Its results outperformed the blind human classification, even using only grayscale pictures. Class Activation Maps showed that AI followed several decision paths, not always like those of the human expert. Next steps are proposed for application of these models to <i>ex situ</i> biogeomorphological structures (fossil and modern MISS) on Earth's surface, to ultimately transpose them to a martian context.

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Publication Details

Journal
Astrobiology
Published
2025-05-30
DOI
https://doi.org/10.1089/ast.2024.0153
Primary Topic
Cell Image Analysis Techniques
Type
article
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article

Artificial Intelligence-Enhanced Detection of Biogenicity Using Laboratory Specimens of Biologically and Microbially Induced Sedimentary Structures in a Controlled Experiment

Jean‐Pierre Toumazet, Jessica Ferriol, Johannes Steiger, Stéphanie Boulêtreau et al.
Astrobiology
Cell Image Analysis Techniques
article

Artificial Intelligence-Enhanced Detection of Biogenicity Using Laboratory Specimens of Biologically and Microbially Induced Sedimentary Structures in a Controlled Experiment

Jean‐Pierre Toumazet, Jessica Ferriol, Johannes Steiger, Stéphanie Boulêtreau, Neil S. Davies, Florent Arrignon, Thierry Otto, Joséphine Leflaive, Erwan Roussel, L.A. Fernández, Dov Corenblit, Frédéric Julien
article en

Abstract

The search for traces of life can be based on the detection of specific signatures produced by microorganisms on sedimentary rocks. Microbially induced sedimentary structures (MISSs) develop under specific physicochemical conditions that are likely to have potentially existed on Mars during the Noachian period. We designed an experiment under controlled laboratory conditions to explore the wide range variability in biogeomorphological responses of clay-sand substrates to the development of biological mats-including microbial mats-of different strains and biomasses, and an abiotic control. A 3D picture dataset based on the experiment was built using multi-image photogrammetry. Visual observations were combined with multivariate statistics on computed topographical variables to interpret the diversity in the resulting biotic and abiotic mud cracks. Finally, an artificial intelligence (AI) classifier based on convolutional neural networks was trained with the data. The resulting model predicted accurately not only the biotic-abiotic differences but also the differences between strains and biomasses of biotic treatments. Its results outperformed the blind human classification, even using only grayscale pictures. Class Activation Maps showed that AI followed several decision paths, not always like those of the human expert. Next steps are proposed for application of these models to <i>ex situ</i> biogeomorphological structures (fossil and modern MISS) on Earth's surface, to ultimately transpose them to a martian context.

AstrobiologyVol. 25(6)
Centre National de la Recherche Scientifique (FR), Université Fédérale de Toulouse Midi-Pyrénées (FR), University of Cambridge (GB), Laboratoire de Géographie Physique et Environnementale (FR), University of Clermont Auvergne (FR), Infectious Disease Models and Innovative Therapies (FR), Institut de Recherche pour le Développement (FR), University College London (GB)
Life below water
Openalex Percentile: Top 91%
Cell Image Analysis Techniques
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