Kernel generalized least squares regression for network-structured data

In this paper, we study a class of non-parametric regression models for predicting graph signals [Formula: see text] as a function of explanatory variables [Formula: see text]. Recently, Kernel Graph Regression (KGR) and Gaussian Processes over Graph (GPoG) have emerged as promising techniques for this task. The goal of this paper is to examine several extensions to KGR/GPoG, with the aim of generalising them a wider variety of data scenarios. The first extension we consider is the case of graph signals that have only been partially recorded, meaning a subset of their elements is missing at observation time. Next, we examine the statistical effect of correlated prediction error and propose a method for Generalized Least Squares (GLS) on graphs. In particular, we examine Autoregressive AR(1) vector autoregressive processes, which are commonly found in time-series applications. Finally, we use the Laplace approximation to determine a lower bound for the out-of-sample prediction error and derive a scalable expression for the marginal variance of each prediction. These methods are tested on both real and synthetic data, with the former taken from a network of air quality monitoring stations across California. We find evidence that the generalised GLS-KGR algorithm is well-suited to such time-series applications, outperforming several standard techniques on this dataset.

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Publication Details

Journal
PLoS ONE
Published
2025-05-30
DOI
https://doi.org/10.1371/journal.pone.0324087
Primary Topic
Advanced Graph Neural Networks
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article
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article

Kernel generalized least squares regression for network-structured data

Edward Antonian, Mike J. Chantler, Gareth William Peters
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PLoS ONE
Advanced Graph Neural Networks
article

Kernel generalized least squares regression for network-structured data

Edward Antonian, Mike J. Chantler, Gareth William Peters
article en

Abstract

In this paper, we study a class of non-parametric regression models for predicting graph signals [Formula: see text] as a function of explanatory variables [Formula: see text]. Recently, Kernel Graph Regression (KGR) and Gaussian Processes over Graph (GPoG) have emerged as promising techniques for this task. The goal of this paper is to examine several extensions to KGR/GPoG, with the aim of generalising them a wider variety of data scenarios. The first extension we consider is the case of graph signals that have only been partially recorded, meaning a subset of their elements is missing at observation time. Next, we examine the statistical effect of correlated prediction error and propose a method for Generalized Least Squares (GLS) on graphs. In particular, we examine Autoregressive AR(1) vector autoregressive processes, which are commonly found in time-series applications. Finally, we use the Laplace approximation to determine a lower bound for the out-of-sample prediction error and derive a scalable expression for the marginal variance of each prediction. These methods are tested on both real and synthetic data, with the former taken from a network of air quality monitoring stations across California. We find evidence that the generalised GLS-KGR algorithm is well-suited to such time-series applications, outperforming several standard techniques on this dataset.

PLoS ONEVol. 20(5)
University of California, Santa Barbara (US), Heriot-Watt University (GB)
Openalex Percentile: Top 94%
Advanced Graph Neural Networks
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