Integrated Single-Cell and Bulk RNA Sequencing Analysis Identifies a Regulated Cell Death-Related Gene Signature for Predicting Prognosis and Therapeutic Responses in Cutaneous Melanoma

Regulated cell death (RCD) is crucial for the advancement of cancers, and providing opportunities as prognostic indicators and immunotherapy markers for patients with cutaneous melanoma (CM). Ten multiomics integrative clustering approaches were performed to identify the CM subtypes. Subsequently, WGCNA was used to screen for module genes. Furthermore, screening hub genes was conducted through machine-learning analyses. Two CM subclasses were identified based on RCD multiomics profiling, each exhibiting distinctive molecular patterns. Then, utilizing the shared cluster DEGs, prognosis DEGs, and key module genes, 30 hub genes were obtained, and an RCD.score was conducted based on these genes. The RCD.score not only reflected the characteristics of the clinical but also provided insights into immunotherapy efficacy. Specifically, low RCD.score category exhibited a more active TME and favorable prognosis, those in the low RCD.score category was more responsive to immunotherapy, suggesting an inflamed TME phenotype. The high RCD.score category had a poor prognosis and was lower responsive to immunotherapy. This research offers genetic support for the possible therapeutic advantages of focusing on RCD in the treatment of CM while also examining their underlying pathophysiological mechanisms.

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Journal
Journal of Immunotherapy
Published
2025-05-30
DOI
https://doi.org/10.1097/cji.0000000000000564
Primary Topic
Cancer Immunotherapy and Biomarkers
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article
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article

Integrated Single-Cell and Bulk RNA Sequencing Analysis Identifies a Regulated Cell Death-Related Gene Signature for Predicting Prognosis and Therapeutic Responses in Cutaneous Melanoma

Saiya Zhu, Jie Tang, Linyu Zhu
Journal of Immunotherapy
Cancer Immunotherapy and Biomarkers
article

Integrated Single-Cell and Bulk RNA Sequencing Analysis Identifies a Regulated Cell Death-Related Gene Signature for Predicting Prognosis and Therapeutic Responses in Cutaneous Melanoma

Saiya Zhu, Jie Tang, Linyu Zhu
article en

Abstract

Regulated cell death (RCD) is crucial for the advancement of cancers, and providing opportunities as prognostic indicators and immunotherapy markers for patients with cutaneous melanoma (CM). Ten multiomics integrative clustering approaches were performed to identify the CM subtypes. Subsequently, WGCNA was used to screen for module genes. Furthermore, screening hub genes was conducted through machine-learning analyses. Two CM subclasses were identified based on RCD multiomics profiling, each exhibiting distinctive molecular patterns. Then, utilizing the shared cluster DEGs, prognosis DEGs, and key module genes, 30 hub genes were obtained, and an RCD.score was conducted based on these genes. The RCD.score not only reflected the characteristics of the clinical but also provided insights into immunotherapy efficacy. Specifically, low RCD.score category exhibited a more active TME and favorable prognosis, those in the low RCD.score category was more responsive to immunotherapy, suggesting an inflamed TME phenotype. The high RCD.score category had a poor prognosis and was lower responsive to immunotherapy. This research offers genetic support for the possible therapeutic advantages of focusing on RCD in the treatment of CM while also examining their underlying pathophysiological mechanisms.

Journal of ImmunotherapyVol. 48(8)
Sun Yat-sen University (CN), The Seventh Affiliated Hospital of Sun Yat-sen University (CN), Dazhou Central Hospital (CN)
Good health and well-being
Openalex Percentile: Top 81%
Cancer Immunotherapy and Biomarkers
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Integrated Single-Cell and Bulk RNA Sequencing Analysis Identifies a Regulated Cell Death-Related Gene Signature for Predicting Prognosis and Therapeutic Responses in Cutaneous Melanoma — Saiya Zhu, Jie Tang, et al. · Journal of Immunotherapy (2025) | TGRS Research Map | TGRS