Salinity Effect on Soil Bacterial and Archaeal Diversity and Assembly in Phragmites australis Salt Marshes in the Qaidam Basin, China

Extreme environments foster phylogenetically diverse microorganisms and unique community assembly patterns. Plateau saline marsh lakes represent understudied extreme habitats characterized by dual stressors of high salinity and low temperature. Here, we analyzed the soil bacterial and archaeal diversity in three salt marshes of the Qaidam Basin on the Qinghai-Tibetan Plateau, China. While the bacterial and archaeal alpha diversity showed no significant differences among the three salt marshes, the community composition varied significantly. Notably, soil salinity (indicated by electric conductivity, EC) exerted opposing effects on microbial diversity-suppressing bacterial while promoting archaeal communities. Stochastic processes were the predominant mechanism for both bacterial and archaeal community assembly, where the weights were, in descending order, drift, homogeneous selection, and dispersal limitation. Network analysis revealed predominantly positive co-occurrence patterns within both bacterial and archaeal communities. We did not find a direct relationship between any bacterial or archaeal co-occurrence network properties and soil EC, but there was a significant correlation of network complexity to microbial diversity, which was influenced by EC. Our findings indicate distinct responses of bacterial and archaeal diversity to varying salinity levels, while the underlying assembly processes appear to be conserved in driving shifts in community diversity in plateau salt marsh wetlands.