Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)
This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.
Authors
- Donna M. Schroeder
- Paige M. Miller (ORCID: https://orcid.org/0000-0002-5419-8601)
- Harold Goss (ORCID: https://orcid.org/0000-0003-1366-4079)
- Henry M. Page (ORCID: https://orcid.org/0000-0002-8420-5390)
- Susan Zaleski
- Robert J. Miller (ORCID: https://orcid.org/0000-0002-8350-3759)
Institutions
- University of California, Santa Barbara (US)
- Pacific Antenna Systems (United States) (US)
Publication Details
- Journal
- BMC Genomic Data
- Published
- 2025-05-28
- DOI
- https://doi.org/10.1186/s12863-025-01330-5
- Citations
- 1
- Primary Topic
- Marine Bivalve and Aquaculture Studies
- Type
- article
- Field-Weighted Citation Impact
- 1.11
Funders
- University of California, Santa Barbara
- Bureau of Ocean Energy Management