Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)

This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.

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Publication Details

Journal
BMC Genomic Data
Published
2025-05-28
DOI
https://doi.org/10.1186/s12863-025-01330-5
Citations
1
Primary Topic
Marine Bivalve and Aquaculture Studies
Type
article
Field-Weighted Citation Impact
1.11

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article

Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)

Donna M. Schroeder, Paige M. Miller, Harold Goss, Henry M. Page et al.
1 citations
BMC Genomic Data
Marine Bivalve and Aquaculture Studies
1.11
article

Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)

Donna M. Schroeder, Paige M. Miller, Harold Goss, Henry M. Page, Susan Zaleski, Robert J. Miller
article en
1 citations

Abstract

This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.

BMC Genomic DataVol. 26(1)
University of California, Santa Barbara (US), Pacific Antenna Systems (United States) (US)
University of California, Santa Barbara, Bureau of Ocean Energy Management
Life in Land
Openalex Percentile: Top 24%
Marine Bivalve and Aquaculture Studies
1.11
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