Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Bromus inermis

<b>Background</b>: <i>Bromus inermis</i> is a high-quality perennial forage grass in the Poaceae family, with significant ecological and economic value. While its chloroplast genome has been sequenced, the mitochondrial genome of this species remains poorly understood due to the inherent complexity and frequent recombination of plant mitochondrial genomes. <b>Methods</b>: We sequenced the complete mitochondrial genome of <i>B. inermis</i> using both Illumina Novaseq6000 and Oxford Nanopore PromethION platforms. Subsequently, comprehensive bioinformatics analyses were performed, including genome assembly and annotation, repetitive sequence identification, codon usage analysis, RNA editing site prediction, the detection of chloroplast-derived sequences, and phylogenetic reconstruction. <b>Results</b>: The mitochondrial genome of <i>B. inermis</i> was determined to be 515,056 bp in length, with a GC content of 44.34%, similar to other Poaceae species. This genome encodes 35 protein-coding genes, 22 tRNA genes, and 10 rRNA genes. Repetitive sequences account for 16.2% of the genome, totaling 83,528 bp, including 124 simple sequence repeats, 293 dispersed repeats, and 31 tandem repeats. A total of 460 RNA editing sites were identified, among which 430 were nonsynonymous. Additionally, 110 putative chloroplast-derived sequences were detected. A phylogenetic analysis based on mitochondrial genome data clarified the species' evolutionary position within Poaceae. <b>Conclusions</b>: This study provides genetic resources for evolutionary research on and the communication of organelle genomes. Meanwhile, it also lays a solid foundation for the better development and utilization of the germplasm resources of <i>B. inermis</i>.

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Publication Details

Journal
Genes
Published
2025-05-28
DOI
https://doi.org/10.3390/genes16060652
Citations
1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.81

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article

Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Bromus inermis

Chunyu Tian, Yanting Yang, Zinian Wu, Wenlong Gong et al.
1 citations
Genes
Genomics and Phylogenetic Studies
0.81
article

Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Bromus inermis

Chunyu Tian, Yanting Yang, Zinian Wu, Wenlong Gong, Zhiyong Li, Si-Fan Feng
article en
1 citations

Abstract

<b>Background</b>: <i>Bromus inermis</i> is a high-quality perennial forage grass in the Poaceae family, with significant ecological and economic value. While its chloroplast genome has been sequenced, the mitochondrial genome of this species remains poorly understood due to the inherent complexity and frequent recombination of plant mitochondrial genomes. <b>Methods</b>: We sequenced the complete mitochondrial genome of <i>B. inermis</i> using both Illumina Novaseq6000 and Oxford Nanopore PromethION platforms. Subsequently, comprehensive bioinformatics analyses were performed, including genome assembly and annotation, repetitive sequence identification, codon usage analysis, RNA editing site prediction, the detection of chloroplast-derived sequences, and phylogenetic reconstruction. <b>Results</b>: The mitochondrial genome of <i>B. inermis</i> was determined to be 515,056 bp in length, with a GC content of 44.34%, similar to other Poaceae species. This genome encodes 35 protein-coding genes, 22 tRNA genes, and 10 rRNA genes. Repetitive sequences account for 16.2% of the genome, totaling 83,528 bp, including 124 simple sequence repeats, 293 dispersed repeats, and 31 tandem repeats. A total of 460 RNA editing sites were identified, among which 430 were nonsynonymous. Additionally, 110 putative chloroplast-derived sequences were detected. A phylogenetic analysis based on mitochondrial genome data clarified the species' evolutionary position within Poaceae. <b>Conclusions</b>: This study provides genetic resources for evolutionary research on and the communication of organelle genomes. Meanwhile, it also lays a solid foundation for the better development and utilization of the germplasm resources of <i>B. inermis</i>.

GenesVol. 16(6)
Chinese Academy of Agricultural Sciences (CN), Institute of Grassland Research (CN)
Ministry of Science and Technology of the People's Republic of China, National Key Research and Development Program of China
Openalex Percentile: Top 28%
Genomics and Phylogenetic Studies
0.81
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