Prognostic implication of six m6A-modulated genes signature in the ferroptosis for hepatocellular carcinoma patients

Hepatocellular carcinoma (HCC) remains one of the most prevalent and lethal malignancies worldwide, with survival rates still falling short of expectations. Emerging evidence highlights the pivotal roles of both m6A methylation and ferroptosis-related genes (FRGs) in HCC progression. However, the prognostic significance of m6A-modulated FRGs remains largely unexplored. In this study, we developed a novel prognostic signature based on m6A-regulated FRGs, identifying six key genes (VEGFA, FANCD2, ZFP69B, EIF2S1, SLC7A11, and SRXN1) through multivariate and LASSO Cox regression analyses. A high m6A-FRGs score was strongly associated with poor prognosis, and multivariate analysis confirmed it as an independent prognostic factor. Notably, the high-risk group exhibited increased expression of immune checkpoint genes and a higher frequency of gene mutations. Functional assays further demonstrated that silencing ZFP69B significantly suppressed liver cancer cell proliferation, migration, and invasion. Clinical validation in 144 HCC samples revealed that elevated ZFP69B expression correlated with worse patient outcomes. Moreover, qPCR analysis confirmed CLSPN and HNRNPR as downstream targets of ZFP69B. Collectively, our findings establish the m6A-FRGs signature as a powerful prognostic tool for HCC and identify ZFP69B as a promising therapeutic target, warranting further investigation.

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Publication Details

Journal
Clinical and Experimental Medicine
Published
2025-05-27
DOI
https://doi.org/10.1007/s10238-025-01700-4
Primary Topic
RNA modifications and cancer
Type
article
Field-Weighted Citation Impact
0.00

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article

Prognostic implication of six m6A-modulated genes signature in the ferroptosis for hepatocellular carcinoma patients

Risheng Lin, Guangtao Zhang, Erbao Chen, Zhilin Zou et al.
Clinical and Experimental Medicine
RNA modifications and cancer
article

Prognostic implication of six m6A-modulated genes signature in the ferroptosis for hepatocellular carcinoma patients

Risheng Lin, Guangtao Zhang, Erbao Chen, Zhilin Zou, Xiao Zhang, Ting Wang, Wen Zhang, Yu He, Zuyong Lan, Ming Chang
article en

Abstract

Hepatocellular carcinoma (HCC) remains one of the most prevalent and lethal malignancies worldwide, with survival rates still falling short of expectations. Emerging evidence highlights the pivotal roles of both m6A methylation and ferroptosis-related genes (FRGs) in HCC progression. However, the prognostic significance of m6A-modulated FRGs remains largely unexplored. In this study, we developed a novel prognostic signature based on m6A-regulated FRGs, identifying six key genes (VEGFA, FANCD2, ZFP69B, EIF2S1, SLC7A11, and SRXN1) through multivariate and LASSO Cox regression analyses. A high m6A-FRGs score was strongly associated with poor prognosis, and multivariate analysis confirmed it as an independent prognostic factor. Notably, the high-risk group exhibited increased expression of immune checkpoint genes and a higher frequency of gene mutations. Functional assays further demonstrated that silencing ZFP69B significantly suppressed liver cancer cell proliferation, migration, and invasion. Clinical validation in 144 HCC samples revealed that elevated ZFP69B expression correlated with worse patient outcomes. Moreover, qPCR analysis confirmed CLSPN and HNRNPR as downstream targets of ZFP69B. Collectively, our findings establish the m6A-FRGs signature as a powerful prognostic tool for HCC and identify ZFP69B as a promising therapeutic target, warranting further investigation.

Clinical and Experimental MedicineVol. 25(1)
Southern University of Science and Technology (CN), Hubei University of Arts and Science (CN), Xiangyang Central Hospital (CN), Peking University Shenzhen Hospital (CN), Nanjing University (CN)
National Natural Science Foundation of China, Guangdong Medical Research Foundation, Natural Science Foundation of Hubei Province, Peking University, Basic and Applied Basic Research Foundation of Guangdong Province
Good health and well-being
Openalex Percentile: Top 89%
RNA modifications and cancer
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