Diffusion based multi-domain neuroimaging harmonization method with preservation of anatomical details

In multi-center neuroimaging studies, the technical variability caused by the batch differences could hinder the ability to aggregate data across sites, and negatively impact the reliability of study-level results. Recent efforts in neuroimaging harmonization have aimed to minimize these technical gaps and reduce technical variability across batches. While Generative Adversarial Networks (GAN) has been a prominent method for addressing harmonization tasks, GAN-harmonized images suffer from artifacts or anatomical distortions. Given the advancements of denoising diffusion probabilistic model which produces high-fidelity images, we have assessed the efficacy of the diffusion model for neuroimaging harmonization. While GAN-based methods intrinsically transform imaging styles between two domains per model, we have demonstrated the diffusion model's superior capability in harmonizing images across multiple domains with single model. Our experiments highlight that the learned domain invariant anatomical condition reinforces the model to accurately preserve the anatomical details while differentiating batch differences at each diffusion step. Our proposed method has been tested using T1-weighted MRI images from two public neuroimaging datasets of ADNI1 and ABIDE II, yielding harmonization results with consistent anatomy preservation and superior FID score compared to the GAN-based methods. We have conducted multiple analyses including extensive quantitative and qualitative evaluations against the baseline models, ablation study showcasing the benefits of the learned domain invariant conditions, and improvements in the consistency of perivascular spaces segmentation analysis and volumetric analysis through harmonization.