Genome-Wide Identification of CaPLATZ Family Members in Pepper and Their Expression Profiles in Response to Drought Stress

<b>Background:</b> The plant AT-rich sequence and zinc binding (PLATZ) transcription factors constitute a zinc-dependent protein family implicated in various developmental processes and responses to abiotic stress. Nevertheless, comprehensive investigations on <i>PLATZ</i> gene functions in pepper (<i>Capsicum annuum</i>) have not been extensively performed. <b>Methods:</b> In the present study, bioinformatics methods coupled with quantitative real-time PCR (qRT-PCR) were employed to characterize the phylogenetic relationships, chromosome distribution, structural composition, cis-regulatory elements, evolutionary dynamics, and expression responses of <i>CaPLATZ</i> genes under drought stress conditions. <b>Results:</b> Phylogenetic analyses categorized the <i>CaPLATZ</i> genes into four distinct subgroups, each exhibiting similar gene structures and conserved motif patterns within its subgroup. A total of 11 <i>CaPLATZ</i> genes were nonuniformly located across eight pepper chromosomes, and synteny analyses identified a duplication event involving a single gene pair. The assessment of cis-acting regulatory elements indicated potential involvement of <i>CaPLATZ</i> genes in responses to abiotic stresses and various phytohormones. Furthermore, qRT-PCR results revealed differential expression of most <i>CaPLATZ</i> genes under drought-induced stress. <b>Conclusions:</b> Collectively, these findings support the functional roles of <i>CaPLATZ</i> transcription factors in mediating developmental processes and enhancing drought tolerance in pepper.

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Publication Details

Journal
Genes
Published
2025-05-24
DOI
https://doi.org/10.3390/genes16060632
Citations
2
Primary Topic
Plant Micronutrient Interactions and Effects
Type
article
Field-Weighted Citation Impact
3.50

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article

Genome-Wide Identification of CaPLATZ Family Members in Pepper and Their Expression Profiles in Response to Drought Stress

Na Yang, Yue Huang, Yuanqian Wang, Wenyao Ma et al.
2 citations
Genes
Plant Micronutrient Interactions and Effects
3.50
article

Genome-Wide Identification of CaPLATZ Family Members in Pepper and Their Expression Profiles in Response to Drought Stress

Na Yang, Yue Huang, Yuanqian Wang, Wenyao Ma, Xingliang Wang, Hui Zhang, Xue Wang
article en
2 citations

Abstract

<b>Background:</b> The plant AT-rich sequence and zinc binding (PLATZ) transcription factors constitute a zinc-dependent protein family implicated in various developmental processes and responses to abiotic stress. Nevertheless, comprehensive investigations on <i>PLATZ</i> gene functions in pepper (<i>Capsicum annuum</i>) have not been extensively performed. <b>Methods:</b> In the present study, bioinformatics methods coupled with quantitative real-time PCR (qRT-PCR) were employed to characterize the phylogenetic relationships, chromosome distribution, structural composition, cis-regulatory elements, evolutionary dynamics, and expression responses of <i>CaPLATZ</i> genes under drought stress conditions. <b>Results:</b> Phylogenetic analyses categorized the <i>CaPLATZ</i> genes into four distinct subgroups, each exhibiting similar gene structures and conserved motif patterns within its subgroup. A total of 11 <i>CaPLATZ</i> genes were nonuniformly located across eight pepper chromosomes, and synteny analyses identified a duplication event involving a single gene pair. The assessment of cis-acting regulatory elements indicated potential involvement of <i>CaPLATZ</i> genes in responses to abiotic stresses and various phytohormones. Furthermore, qRT-PCR results revealed differential expression of most <i>CaPLATZ</i> genes under drought-induced stress. <b>Conclusions:</b> Collectively, these findings support the functional roles of <i>CaPLATZ</i> transcription factors in mediating developmental processes and enhancing drought tolerance in pepper.

GenesVol. 16(6)
Heilongjiang Provincial Academy of Agricultural Sciences (CN)
Key Research and Development Program of Heilongjiang, Key Technology Research and Development Program of Shandong
Life below water
Openalex Percentile: Top 8%
Plant Micronutrient Interactions and Effects
3.50
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