Nucleophilic aromatic substitutions enable diversity-oriented synthesis of heterocyclic atropisomers via non-atropisomeric intermediates

Atropisomers are sterically hindered molecules whose formation typically proceeds via atropisomeric intermediates and encumbered transition states. It is therefore largely accepted that the activation energy is higher for synthesis of atropisomers than for synthesis of similar, less sterically congested non-atropisomeric compounds. Here we show that atropisomer formation by nucleophilic aromatic substitution (S<sub>N</sub>Ar) reactions can progress via non-atropisomeric intermediates and transition states. We put forth fast, mild, practical, regio- and chemoselective S<sub>N</sub>Ar reactions that generate a diverse array of difficult-to-access heterobiaryl C─N atropisomers starting with readily available N─H heterocycles and aryl fluorides, as well as two catalytic methods employing N─SiR<sub>3</sub> and N─H heterocycles for synthesis of title atropisomers in seconds. Products of S<sub>N</sub>Ar are readily diversifiable, streamlining access to countless drug-like C─N atropisomers, including macrocycles, peptides, and analogs of achiral heterobiaryl pharmaceuticals. Supported by experimental and computational data, we discuss how steric repulsion is minimized in stereogenic axis-forming S<sub>N</sub>Ar processes.

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Publication Details

Journal
Nature Communications
Published
2025-05-25
DOI
https://doi.org/10.1038/s41467-025-60101-z
Citations
4
Primary Topic
Axial and Atropisomeric Chirality Synthesis
Type
article
Field-Weighted Citation Impact
3.74

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article

Nucleophilic aromatic substitutions enable diversity-oriented synthesis of heterocyclic atropisomers via non-atropisomeric intermediates

Daniel Bím, Krishanu Mondal, Martin Dračínský, Paulo H. S. Paioti et al.
4 citations
Nature Communications
Axial and Atropisomeric Chirality Synthesis
3.74
article

Nucleophilic aromatic substitutions enable diversity-oriented synthesis of heterocyclic atropisomers via non-atropisomeric intermediates

Daniel Bím, Krishanu Mondal, Martin Dračínský, Paulo H. S. Paioti, M. Šimek, Paramita D. Dey, Vilém Blahout, Jeanne Ernenwein
article en
4 citations

Abstract

Atropisomers are sterically hindered molecules whose formation typically proceeds via atropisomeric intermediates and encumbered transition states. It is therefore largely accepted that the activation energy is higher for synthesis of atropisomers than for synthesis of similar, less sterically congested non-atropisomeric compounds. Here we show that atropisomer formation by nucleophilic aromatic substitution (S<sub>N</sub>Ar) reactions can progress via non-atropisomeric intermediates and transition states. We put forth fast, mild, practical, regio- and chemoselective S<sub>N</sub>Ar reactions that generate a diverse array of difficult-to-access heterobiaryl C─N atropisomers starting with readily available N─H heterocycles and aryl fluorides, as well as two catalytic methods employing N─SiR<sub>3</sub> and N─H heterocycles for synthesis of title atropisomers in seconds. Products of S<sub>N</sub>Ar are readily diversifiable, streamlining access to countless drug-like C─N atropisomers, including macrocycles, peptides, and analogs of achiral heterobiaryl pharmaceuticals. Supported by experimental and computational data, we discuss how steric repulsion is minimized in stereogenic axis-forming S<sub>N</sub>Ar processes.

Nature CommunicationsVol. 16(1)
Czech Academy of Sciences (CZ), Charles University (CZ), Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry (CZ), University of Chemistry and Technology, Prague (CZ)
Grantová Agentura České Republiky
Openalex Percentile: Top 7%
Axial and Atropisomeric Chirality Synthesis
3.74
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