Comprehensive curation and validation of genomic datasets for chestnut
The Chinese chestnut (Castanea mollissima) stands out as a plant with significant ecological and economic value, excellent nutritional quality and natural resistance to pests and diseases. Recent strides in high-throughput techniques have enabled the continuous accumulation of genomic data on chestnuts, presenting a promising future for genetic research and advancing traits in this species. To facilitate the accessibility and utility of this data, we have curated and analyzed a collection of genomic datasets for eight Castanea species, including functional annotations, 213 RNA-Seq samples, and 330 resequencing samples. These datasets are publicly available on Figshare and are also available through other platforms such as GEO and EVA, providing a valuable resource for researchers studying Castanea genetics, functional genomics, and evolutionary biology. Furthermore, the datasets are integrated into the Castanea Genome Database (CGD, http://castaneadb.net ), which serves as a complementary platform, offering advanced data mining and analysis tools, including BLAST, Batch Query, GO/KEGG Enrichment Analysis, and Synteny Viewer, to enhance the usability of the curated datasets.
Authors
- Hanfeng Li
- Ling Qin (ORCID: https://orcid.org/0000-0002-9814-5771)
- Yi Zheng (ORCID: https://orcid.org/0000-0002-8042-7770)
- Jialu Fan
- Yang Liu (ORCID: https://orcid.org/0000-0001-7104-5554)
- Xinghua Nie (ORCID: https://orcid.org/0000-0001-5627-6557)
- Sen Wang (ORCID: https://orcid.org/0000-0002-3497-3068)
- Yu Zhang (ORCID: https://orcid.org/0009-0005-6907-7393)
- Mingjun Zhang (ORCID: https://orcid.org/0000-0002-7707-8661)
- Shangxiao Wei
- Yu Xing (ORCID: https://orcid.org/0000-0002-1647-9736)
- Haixu Peng (ORCID: https://orcid.org/0000-0003-4550-1880)
- Ning Lu
Institutions
- National Library of China (CN)
- State Forestry and Grassland Administration (CN)
- Beijing University of Agriculture (CN)
- Beijing Advanced Sciences and Innovation Center (CN)
Publication Details
- Journal
- Scientific Data
- Published
- 2025-05-24
- DOI
- https://doi.org/10.1038/s41597-025-05162-x
- Citations
- 2
- Primary Topic
- Plant and Fungal Interactions Research
- Type
- article
- Field-Weighted Citation Impact
- 3.60
Funders
- Beijing University of Agriculture