Comprehensive curation and validation of genomic datasets for chestnut

The Chinese chestnut (Castanea mollissima) stands out as a plant with significant ecological and economic value, excellent nutritional quality and natural resistance to pests and diseases. Recent strides in high-throughput techniques have enabled the continuous accumulation of genomic data on chestnuts, presenting a promising future for genetic research and advancing traits in this species. To facilitate the accessibility and utility of this data, we have curated and analyzed a collection of genomic datasets for eight Castanea species, including functional annotations, 213 RNA-Seq samples, and 330 resequencing samples. These datasets are publicly available on Figshare and are also available through other platforms such as GEO and EVA, providing a valuable resource for researchers studying Castanea genetics, functional genomics, and evolutionary biology. Furthermore, the datasets are integrated into the Castanea Genome Database (CGD, http://castaneadb.net ), which serves as a complementary platform, offering advanced data mining and analysis tools, including BLAST, Batch Query, GO/KEGG Enrichment Analysis, and Synteny Viewer, to enhance the usability of the curated datasets.

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Publication Details

Journal
Scientific Data
Published
2025-05-24
DOI
https://doi.org/10.1038/s41597-025-05162-x
Citations
2
Primary Topic
Plant and Fungal Interactions Research
Type
article
Field-Weighted Citation Impact
3.60

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article

Comprehensive curation and validation of genomic datasets for chestnut

Hanfeng Li, Ling Qin, Yi Zheng, Jialu Fan et al.
2 citations
Scientific Data
Plant and Fungal Interactions Research
3.60
article

Comprehensive curation and validation of genomic datasets for chestnut

Hanfeng Li, Ling Qin, Yi Zheng, Jialu Fan, Yang Liu, Xinghua Nie, Sen Wang, Yu Zhang, Mingjun Zhang, Shangxiao Wei, Yu Xing, Haixu Peng, Ning Lu
article en
2 citations

Abstract

The Chinese chestnut (Castanea mollissima) stands out as a plant with significant ecological and economic value, excellent nutritional quality and natural resistance to pests and diseases. Recent strides in high-throughput techniques have enabled the continuous accumulation of genomic data on chestnuts, presenting a promising future for genetic research and advancing traits in this species. To facilitate the accessibility and utility of this data, we have curated and analyzed a collection of genomic datasets for eight Castanea species, including functional annotations, 213 RNA-Seq samples, and 330 resequencing samples. These datasets are publicly available on Figshare and are also available through other platforms such as GEO and EVA, providing a valuable resource for researchers studying Castanea genetics, functional genomics, and evolutionary biology. Furthermore, the datasets are integrated into the Castanea Genome Database (CGD, http://castaneadb.net ), which serves as a complementary platform, offering advanced data mining and analysis tools, including BLAST, Batch Query, GO/KEGG Enrichment Analysis, and Synteny Viewer, to enhance the usability of the curated datasets.

Scientific DataVol. 12(1)
National Library of China (CN), State Forestry and Grassland Administration (CN), Beijing University of Agriculture (CN), Beijing Advanced Sciences and Innovation Center (CN)
Beijing University of Agriculture
Zero hunger
Openalex Percentile: Top 9%
Plant and Fungal Interactions Research
3.60
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