Mechanism of circRNA_4083 Circularization and Its Role in Regulating Cell Viability

Circular RNAs (circRNAs), a class of covalently closed non-coding RNAs, are pivotal regulators of gene expression and contributors to disease pathogenesis. This study elucidated the biogenesis, functional significance, and regulatory network of circRNA_4083, a novel exon-derived circRNA originating from exons 22 and 23 of the <i>MSH3</i> gene in chicken. Through comprehensive molecular characterization-including Sanger sequencing, RNase R digestion assays, and subcellular localization-we confirmed the robust stability and predominant cytoplasmic localization of circRNA_4083 across diverse chicken tissues. Mechanistic investigations revealed that reverse complementary sequences within flanking intronic regions are indispensable for its circularization, as demonstrated by overexpression plasmids (#1-#4) in DF-1 cells. Functional analyses demonstrated that circRNA_4083 significantly inhibited cell apoptosis and increased cellular viability. Integrative bioinformatics approaches predicted a competing endogenous RNA (ceRNA) network comprising 12 miRNAs and 2132 target genes (FDR < 0.05), with significant enrichment in pathways critical to genomic stability, including non-homologous end joining (NHEJ) and ubiquitin-mediated proteolysis. These findings position circRNA_4083 as a key modulator of cellular viability and genomic integrity, with potential implications for avian leukosis virus-J (ALV-J) pathogenesis and resistance breeding strategies. This work advances our understanding of circRNA-driven regulatory mechanisms in avian species and underscores their relevance in poultry health.

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Publication Details

Journal
Animals
Published
2025-05-23
DOI
https://doi.org/10.3390/ani15111527
Primary Topic
Circular RNAs in diseases
Type
article
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article

Mechanism of circRNA_4083 Circularization and Its Role in Regulating Cell Viability

Ting Yang, Hao Bai, Guobin Chang, Wenhao Li et al.
Animals
Circular RNAs in diseases
article

Mechanism of circRNA_4083 Circularization and Its Role in Regulating Cell Viability

Ting Yang, Hao Bai, Guobin Chang, Wenhao Li, Haojie Wang, Lingling Qiu
article en

Abstract

Circular RNAs (circRNAs), a class of covalently closed non-coding RNAs, are pivotal regulators of gene expression and contributors to disease pathogenesis. This study elucidated the biogenesis, functional significance, and regulatory network of circRNA_4083, a novel exon-derived circRNA originating from exons 22 and 23 of the <i>MSH3</i> gene in chicken. Through comprehensive molecular characterization-including Sanger sequencing, RNase R digestion assays, and subcellular localization-we confirmed the robust stability and predominant cytoplasmic localization of circRNA_4083 across diverse chicken tissues. Mechanistic investigations revealed that reverse complementary sequences within flanking intronic regions are indispensable for its circularization, as demonstrated by overexpression plasmids (#1-#4) in DF-1 cells. Functional analyses demonstrated that circRNA_4083 significantly inhibited cell apoptosis and increased cellular viability. Integrative bioinformatics approaches predicted a competing endogenous RNA (ceRNA) network comprising 12 miRNAs and 2132 target genes (FDR < 0.05), with significant enrichment in pathways critical to genomic stability, including non-homologous end joining (NHEJ) and ubiquitin-mediated proteolysis. These findings position circRNA_4083 as a key modulator of cellular viability and genomic integrity, with potential implications for avian leukosis virus-J (ALV-J) pathogenesis and resistance breeding strategies. This work advances our understanding of circRNA-driven regulatory mechanisms in avian species and underscores their relevance in poultry health.

AnimalsVol. 15(11)
Yangzhou University (CN)
Life in Land
Openalex Percentile: Top 90%
Circular RNAs in diseases
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