nf-core/marsseq: systematic preprocessing pipeline for MARS-seq experiments
We introduce an updated preprocessing pipeline for MARS-seq experiments following state-of-the-art guidelines for scientific software development with the added ability to infer RNA velocity.
Authors
- Martin Proks (ORCID: https://orcid.org/0000-0002-8178-3128)
- Jakub Sedzinski (ORCID: https://orcid.org/0000-0002-1788-0329)
- Joshua M. Brickman (ORCID: https://orcid.org/0000-0003-1580-7491)
- José Alejandro Romero Herrera (ORCID: https://orcid.org/0000-0002-4765-2087)
Institutions
- University of Copenhagen (DK)
- Novo Nordisk Foundation (DK)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioadv/vbaf089
- Citations
- 3
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.47
Funders
- European Commission
- National Research Foundation
- Danmarks Grundforskningsfond
- Lundbeckfonden
- Novo Nordisk
- Danmarks Frie Forskningsfond
- Novo Nordisk Fonden
- H. Lundbeck A/S