Theoretical investigation of F<sub>430</sub>-catalyzed dehalogenation of chloro-alkanes. A comprehensive DFT benchmark
We conducted a comprehensive benchmarking study to assess the performance of 40 theoretical levels for modeling the mechanism of dehalogenation of chloromethane by octaethylisobacteriochlorin (OEtiBCh-Ni), a simplified model of the F<sub>430</sub> cofactor. Our research has demonstrated a substantial impact of dispersion on the reaction barrier. Additionally, we have identified a correlation between the deformation of the isobacteriochlorin ring and the relative stability of the system. We observe relatively sizeable kinetic isotope effect (KIE) values in the range of 1.010-1.011, which is above the expected values for typical S<sub>N</sub>2 reactions. The optimal choice for modeling of this reaction is the MN15-L functional with the def2-TZVP basis set, which yields a relative error of less than 3% while exhibiting a high level of computational efficiency. The combination of M06-D3(0), PBE0-D3(BJ), and HSE06-D3(BJ) with 6-31+G(d) also represents a viable option, offering a computational cost comparable to MN15-L/def2TZVP. Calculations using the low-cost def2-SVP basis set are the fastest, but the resulting geometries are questionable.
Authors
- Li Ji (ORCID: https://orcid.org/0000-0001-8219-1426)
- Piotr Paneth (ORCID: https://orcid.org/0000-0002-3091-8387)
- Mateusz Pokora (ORCID: https://orcid.org/0000-0001-8835-9664)
- Dominik Dusza
Institutions
- Lodz University of Technology (PL)
- China University of Mining and Technology (CN)
Publication Details
- Journal
- Physical Chemistry Chemical Physics
- Published
- 2025-01-01
- DOI
- https://doi.org/10.1039/d4cp04500a
- Citations
- 2
- Primary Topic
- Environmental remediation with nanomaterials
- Type
- article
- Field-Weighted Citation Impact
- 1.35
Funders
- Narodowe Centrum Nauki
- Politechnika Lódzka
- Infrastruktura PL-Grid
- Academic Computer Centre Cyfronet, AGH University of Science and Technology