A haplotype-resolved chromosomal-level genome assembly of Oxalis articulata
Oxalis articulata is a widely distributed perennial herb known for its adaptability to diverse environmental conditions. Here, we report the first haplotype-resolved, chromosome-scale genome assembly for O. articulata (Oxalidaceae), generated through PacBio HiFi long reads and Hi-C technology. The resulting assembly comprises two haplotypes with sizes of 377.04 Mb (contig N50 = 31.13 Mb) and 342.70 Mb (contig N50 = 47.46 Mb), respectively. We predicted 36,063 protein-coding genes (94.33% functionally annotated) and 38,292 protein-coding genes (93.80% functionally annotated) in the two haplotypes, respectively. This high-quality genome assembly lays a solid groundwork for future initiatives in ecological and biochemical research for O. articulata.
Authors
- Zefu Wang (ORCID: https://orcid.org/0000-0002-5440-4188)
- Chenlong Fu (ORCID: https://orcid.org/0000-0003-3752-461X)
- Zhuangwei Hou (ORCID: https://orcid.org/0009-0001-6873-3230)
- Cong Jiang (ORCID: https://orcid.org/0000-0002-5634-3200)
- Changwei Bi (ORCID: https://orcid.org/0000-0002-6951-2464)
- Quanjun Hu (ORCID: https://orcid.org/0000-0001-6922-2144)
- Zhuang Zhao (ORCID: https://orcid.org/0000-0002-8021-3879)
- Wenjie Yang (ORCID: https://orcid.org/0000-0001-6446-0020)
- Fangping Li
Institutions
- South China Agricultural University (CN)
- Nanjing Forestry University (CN)
- Sichuan University (CN)
- Agricultural Genomics Institute at Shenzhen (CN)
- Chinese Academy of Agricultural Sciences (CN)
- Ministry of Agriculture and Rural Affairs (CN)
Publication Details
- Journal
- Scientific Data
- Published
- 2025-05-23
- DOI
- https://doi.org/10.1038/s41597-025-05237-9
- Citations
- 4
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 3.22
Funders
- National Natural Science Foundation of China
- Government of Jiangsu Province
- Natural Science Foundation of Jiangsu Province