M-band wavelet-based multi-view clustering of cells
Wavelet analysis has been recognized as a widely used and promising tool in the fields of signal processing and data analysis. However, the application of wavelet-based method in single-cell RNA sequencing (scRNA-seq) data is little known. Here, we present M-band wavelet-based scRNA-seq multi-view clustering of cells (WMC). We applied for integration of M-band wavelet analysis and uniform manifold approximation and projection (UMAP) to a panel of single cell sequencing datasets by breaking up the data matrix into an approximation or low resolution component and M-1 detail or high resolution components. Our method is armed with multi-view clustering of cell types, identity, and functional states, enabling missing cell types visualization and new cell types discovery. Distinct to standard scRNA-seq workflow, our wavelet-based approach is a new addition to uncover rare cell types with a fine resolution.
Authors
- Zihuan Liu
- Adeethyia Shankar (ORCID: https://orcid.org/0000-0003-4298-2797)
- Xiaodi Wang (ORCID: https://orcid.org/0000-0003-3150-9574)
- Tong Liu (ORCID: https://orcid.org/0000-0001-5497-8117)
- Yongzhong Zhao
- Wenke Sun
Institutions
- Universidad de La Frontera (CL)
- Western Connecticut State University (US)
- Dalian University of Technology (CN)
- Brown University (US)
- AbbVie (United States) (US)
- Tsinghua University (CN)
Publication Details
- Journal
- PLoS Computational Biology
- Published
- 2025-05-23
- DOI
- https://doi.org/10.1371/journal.pcbi.1013060
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00