M-band wavelet-based multi-view clustering of cells

Wavelet analysis has been recognized as a widely used and promising tool in the fields of signal processing and data analysis. However, the application of wavelet-based method in single-cell RNA sequencing (scRNA-seq) data is little known. Here, we present M-band wavelet-based scRNA-seq multi-view clustering of cells (WMC). We applied for integration of M-band wavelet analysis and uniform manifold approximation and projection (UMAP) to a panel of single cell sequencing datasets by breaking up the data matrix into an approximation or low resolution component and M-1 detail or high resolution components. Our method is armed with multi-view clustering of cell types, identity, and functional states, enabling missing cell types visualization and new cell types discovery. Distinct to standard scRNA-seq workflow, our wavelet-based approach is a new addition to uncover rare cell types with a fine resolution.

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Publication Details

Journal
PLoS Computational Biology
Published
2025-05-23
DOI
https://doi.org/10.1371/journal.pcbi.1013060
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
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article

M-band wavelet-based multi-view clustering of cells

Zihuan Liu, Adeethyia Shankar, Xiaodi Wang, Tong Liu et al.
PLoS Computational Biology
Single-cell and spatial transcriptomics
article

M-band wavelet-based multi-view clustering of cells

Zihuan Liu, Adeethyia Shankar, Xiaodi Wang, Tong Liu, Yongzhong Zhao, Wenke Sun
article en

Abstract

Wavelet analysis has been recognized as a widely used and promising tool in the fields of signal processing and data analysis. However, the application of wavelet-based method in single-cell RNA sequencing (scRNA-seq) data is little known. Here, we present M-band wavelet-based scRNA-seq multi-view clustering of cells (WMC). We applied for integration of M-band wavelet analysis and uniform manifold approximation and projection (UMAP) to a panel of single cell sequencing datasets by breaking up the data matrix into an approximation or low resolution component and M-1 detail or high resolution components. Our method is armed with multi-view clustering of cell types, identity, and functional states, enabling missing cell types visualization and new cell types discovery. Distinct to standard scRNA-seq workflow, our wavelet-based approach is a new addition to uncover rare cell types with a fine resolution.

PLoS Computational BiologyVol. 21(5)
Universidad de La Frontera (CL), Western Connecticut State University (US), Dalian University of Technology (CN), Brown University (US), AbbVie (United States) (US), Tsinghua University (CN)
Openalex Percentile: Top 90%
Single-cell and spatial transcriptomics
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M-band wavelet-based multi-view clustering of cells — Zihuan Liu, Adeethyia Shankar, et al. · PLoS Computational Biology (2025) | TGRS Research Map | TGRS