Spatial Variation in Coral Diversity and Reef Complexity in the Galápagos: Insights from Underwater Photogrammetry and New Data Extraction Methods

Corals in the Galápagos present diverse reef configurations from biogenic coral reefs to coral communities growing on rocks and sand. These corals have experienced decades of disturbances including recurring El Niño and mass bleaching events. However, traditional methods in ecology have limited capacity in describing coral demographic trends across large spatial scales. Photogrammetry—a form of 3D imaging, has emerged over the past decade as a popular method for benthic surveys. However, the majority of protocols in the field utilize the 2D products of photogrammetry, ignoring overhangs and leaving significant information unexploited. We surveyed seven reef sites across the archipelago using underwater photogrammetry and developed new methods for 3D annotation and fractal dimension calculation. Our findings reveal variation in coral cover, diversity, and structural complexity across the archipelago. Our results align with previous studies in the region and add important information on reef structural complexity which was not measured here before. We release a unique dataset: Galápagos_3D, including seven 3D models and over 17,000 annotated images. This study establishes an important baseline for long-term monitoring, research, and conservation in the Galápagos, potentially informing evidence-based policies and advancing our understanding of coral resilience and recovery.