Characterization of a <i>bla</i> <sub>KPC-3</sub> -carrying plasmid in a clinical isolate of <i>Klebsiella pneumoniae</i> belonging to the emerging successful clone ST147
<i>Klebsiella pneumoniae</i> ST147 has emerged as a successful clone able to efficiently disseminate a number of carbapenemases, including <i>bla</i><sub>KPC</sub>. This study compared a representative <i>bla</i><sub>KPC-3</sub>-carrying plasmid of an ST147 clone with plasmids that usually harbor <i>bla</i><sub>KPC-3</sub> belonging to the high-risk clone ST512. Five clinical isolates of KPC-3-producing <i>K. pneumoniae</i> belonging to ST147 isolated in Southern Spain were analyzed. The first ST147 isolate detected was compared with two previous isolates of <i>K. pneumoniae</i> ST512/KPC-3 and KPC-3-encoding plasmid pKpQIL as reference plasmid. Microdilution, disk diffusion, β-CARBA test, and NG-Test CARBA 5 were used for antimicrobial susceptibility analysis and phenotypic characterization of the isolates according to EUCAST guidelines. Molecular characterization was performed using pulsed-field gel electrophoresis (PFGE)-<i>Xba</i>I, sequenced (by Illumina and Oxford Nanopore) and annotated with open-source databases (CGE tools and RAST). Plasmid incompatibility groups were analyzed using PlasmidFinder; BRIG was used to compare the <i>bla</i><sub>KPC-3</sub>-harboring plasmids from three of the selected clinical isolates with each other and with pKpQIL. Clinical isolates of ST147/KPC-3 showed resistance to β-lactams, fluoroquinolones, and aminoglycosides. Clinical isolates ST147/KPC-3 and ST512/KPC-3 had identical PFGE patterns in each clone. Plasmid replicon analysis showed a plasmid with the formula IncFII (K2:A-:B-) in the ST512 isolates, identical to pKpQIL; the ST147 isolates harbored IncFII (K1:A-:B-), although the genetic environment of <i>bla</i><sub>KPC-3</sub> was the same as pKpQIL, which is Tn<i>4401</i>_IS<i>Kpn7</i> upstream of <i>bla</i><sub>KPC-3</sub> and IS<i>Kpn6</i> downstream of <i>bla</i><sub>KPC-3</sub>. Plasmids harboring <i>bla</i><sub>KPC-3</sub> in ST147 and ST512 are different, although differences are subtle. The genetic environment of <i>bla</i><sub>KPC-3</sub> in the different sequence types is very conservative and identical to pKpQIL.IMPORTANCEThe successful spread of <i>bla</i><sub>KPC</sub> is primarily due to the dissemination of <i>K. pneumoniae</i> isolates belonging to high-risk clonal complex 258 (ST258, ST11, and ST512); however, new clones are emerging globally as the ST147 clone. In this study, we compare the genetic environment of a representative <i>bla</i><sub>KPC-3</sub>-carrying plasmid of an ST147 clone with plasmids that usually harbor <i>bla</i><sub>KPC-3</sub> belonging to the high-risk clone ST512. Plasmids harboring <i>bla</i><sub>KPC-3</sub> detected in ST512 and ST147 were different; however, the close genetic environments of <i>bla</i><sub>KPC-3</sub> in the different plasmids (ST147 and ST512) remained conserved.
Authors
- Mercedes Delgado-Valverde
- Irene Gracia-Ahufinger (ORCID: https://orcid.org/0000-0001-7714-6620)
- Juan Manuel Sánchez Calvo (ORCID: https://orcid.org/0000-0001-7803-2879)
- Patricia Pérez‐Palacios (ORCID: https://orcid.org/0000-0002-3775-5330)
- Álvaro Pascual (ORCID: https://orcid.org/0000-0002-8672-5891)
- Esther Recacha (ORCID: https://orcid.org/0000-0001-7555-2924)
- Inés Portillo-Calderón (ORCID: https://orcid.org/0000-0003-1692-9538)
- Marina R. Pulido (ORCID: https://orcid.org/0000-0003-1633-4294)
- Elena Pérez‐Nadales (ORCID: https://orcid.org/0000-0002-6796-1813)
Institutions
- Instituto de Salud Carlos III (ES)
- Hospital Universitario Virgen Macarena (ES)
- Instituto Maimónides de Investigación Biomédica de Córdoba (ES)
- Centro de Investigación Biomédica en Red (ES)
- Hospital Universitario Reina Sofía (ES)
- Instituto de Biomedicina de Sevilla (ES)
- Hospital Universitario Virgen del Rocío (ES)
- Hospital Jerez Puerta del Sur (ES)
- University of Córdoba (ES)
- Universidad de Sevilla (ES)
Publication Details
- Journal
- Microbiology Spectrum
- Published
- 2025-05-23
- DOI
- https://doi.org/10.1128/spectrum.02338-24
- Citations
- 1
- Primary Topic
- Antibiotic Resistance in Bacteria
- Type
- article
- Field-Weighted Citation Impact
- 0.59