Characterization of a <i>bla</i> <sub>KPC-3</sub> -carrying plasmid in a clinical isolate of <i>Klebsiella pneumoniae</i> belonging to the emerging successful clone ST147

<i>Klebsiella pneumoniae</i> ST147 has emerged as a successful clone able to efficiently disseminate a number of carbapenemases, including <i>bla</i><sub>KPC</sub>. This study compared a representative <i>bla</i><sub>KPC-3</sub>-carrying plasmid of an ST147 clone with plasmids that usually harbor <i>bla</i><sub>KPC-3</sub> belonging to the high-risk clone ST512. Five clinical isolates of KPC-3-producing <i>K. pneumoniae</i> belonging to ST147 isolated in Southern Spain were analyzed. The first ST147 isolate detected was compared with two previous isolates of <i>K. pneumoniae</i> ST512/KPC-3 and KPC-3-encoding plasmid pKpQIL as reference plasmid. Microdilution, disk diffusion, β-CARBA test, and NG-Test CARBA 5 were used for antimicrobial susceptibility analysis and phenotypic characterization of the isolates according to EUCAST guidelines. Molecular characterization was performed using pulsed-field gel electrophoresis (PFGE)-<i>Xba</i>I, sequenced (by Illumina and Oxford Nanopore) and annotated with open-source databases (CGE tools and RAST). Plasmid incompatibility groups were analyzed using PlasmidFinder; BRIG was used to compare the <i>bla</i><sub>KPC-3</sub>-harboring plasmids from three of the selected clinical isolates with each other and with pKpQIL. Clinical isolates of ST147/KPC-3 showed resistance to β-lactams, fluoroquinolones, and aminoglycosides. Clinical isolates ST147/KPC-3 and ST512/KPC-3 had identical PFGE patterns in each clone. Plasmid replicon analysis showed a plasmid with the formula IncFII (K2:A-:B-) in the ST512 isolates, identical to pKpQIL; the ST147 isolates harbored IncFII (K1:A-:B-), although the genetic environment of <i>bla</i><sub>KPC-3</sub> was the same as pKpQIL, which is Tn<i>4401</i>_IS<i>Kpn7</i> upstream of <i>bla</i><sub>KPC-3</sub> and IS<i>Kpn6</i> downstream of <i>bla</i><sub>KPC-3</sub>. Plasmids harboring <i>bla</i><sub>KPC-3</sub> in ST147 and ST512 are different, although differences are subtle. The genetic environment of <i>bla</i><sub>KPC-3</sub> in the different sequence types is very conservative and identical to pKpQIL.IMPORTANCEThe successful spread of <i>bla</i><sub>KPC</sub> is primarily due to the dissemination of <i>K. pneumoniae</i> isolates belonging to high-risk clonal complex 258 (ST258, ST11, and ST512); however, new clones are emerging globally as the ST147 clone. In this study, we compare the genetic environment of a representative <i>bla</i><sub>KPC-3</sub>-carrying plasmid of an ST147 clone with plasmids that usually harbor <i>bla</i><sub>KPC-3</sub> belonging to the high-risk clone ST512. Plasmids harboring <i>bla</i><sub>KPC-3</sub> detected in ST512 and ST147 were different; however, the close genetic environments of <i>bla</i><sub>KPC-3</sub> in the different plasmids (ST147 and ST512) remained conserved.

Authors

Institutions

Publication Details

Journal
Microbiology Spectrum
Published
2025-05-23
DOI
https://doi.org/10.1128/spectrum.02338-24
Citations
1
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
Field-Weighted Citation Impact
0.59
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Characterization of a bla KPC-3 -carrying plasmid in a clinical isolate of Klebsiella pneumoniae belonging to the emerging successful clone ST147

Mercedes Delgado-Valverde, Irene Gracia-Ahufinger, Juan Manuel Sánchez Calvo, Patricia Pérez‐Palacios et al.
1 citations
Microbiology Spectrum
Antibiotic Resistance in Bacteria
0.59
article

Characterization of a bla KPC-3 -carrying plasmid in a clinical isolate of Klebsiella pneumoniae belonging to the emerging successful clone ST147

Mercedes Delgado-Valverde, Irene Gracia-Ahufinger, Juan Manuel Sánchez Calvo, Patricia Pérez‐Palacios, Álvaro Pascual, Esther Recacha, Inés Portillo-Calderón, Marina R. Pulido, Elena Pérez‐Nadales
article en
1 citations

Abstract

<i>Klebsiella pneumoniae</i> ST147 has emerged as a successful clone able to efficiently disseminate a number of carbapenemases, including <i>bla</i><sub>KPC</sub>. This study compared a representative <i>bla</i><sub>KPC-3</sub>-carrying plasmid of an ST147 clone with plasmids that usually harbor <i>bla</i><sub>KPC-3</sub> belonging to the high-risk clone ST512. Five clinical isolates of KPC-3-producing <i>K. pneumoniae</i> belonging to ST147 isolated in Southern Spain were analyzed. The first ST147 isolate detected was compared with two previous isolates of <i>K. pneumoniae</i> ST512/KPC-3 and KPC-3-encoding plasmid pKpQIL as reference plasmid. Microdilution, disk diffusion, β-CARBA test, and NG-Test CARBA 5 were used for antimicrobial susceptibility analysis and phenotypic characterization of the isolates according to EUCAST guidelines. Molecular characterization was performed using pulsed-field gel electrophoresis (PFGE)-<i>Xba</i>I, sequenced (by Illumina and Oxford Nanopore) and annotated with open-source databases (CGE tools and RAST). Plasmid incompatibility groups were analyzed using PlasmidFinder; BRIG was used to compare the <i>bla</i><sub>KPC-3</sub>-harboring plasmids from three of the selected clinical isolates with each other and with pKpQIL. Clinical isolates of ST147/KPC-3 showed resistance to β-lactams, fluoroquinolones, and aminoglycosides. Clinical isolates ST147/KPC-3 and ST512/KPC-3 had identical PFGE patterns in each clone. Plasmid replicon analysis showed a plasmid with the formula IncFII (K2:A-:B-) in the ST512 isolates, identical to pKpQIL; the ST147 isolates harbored IncFII (K1:A-:B-), although the genetic environment of <i>bla</i><sub>KPC-3</sub> was the same as pKpQIL, which is Tn<i>4401</i>_IS<i>Kpn7</i> upstream of <i>bla</i><sub>KPC-3</sub> and IS<i>Kpn6</i> downstream of <i>bla</i><sub>KPC-3</sub>. Plasmids harboring <i>bla</i><sub>KPC-3</sub> in ST147 and ST512 are different, although differences are subtle. The genetic environment of <i>bla</i><sub>KPC-3</sub> in the different sequence types is very conservative and identical to pKpQIL.IMPORTANCEThe successful spread of <i>bla</i><sub>KPC</sub> is primarily due to the dissemination of <i>K. pneumoniae</i> isolates belonging to high-risk clonal complex 258 (ST258, ST11, and ST512); however, new clones are emerging globally as the ST147 clone. In this study, we compare the genetic environment of a representative <i>bla</i><sub>KPC-3</sub>-carrying plasmid of an ST147 clone with plasmids that usually harbor <i>bla</i><sub>KPC-3</sub> belonging to the high-risk clone ST512. Plasmids harboring <i>bla</i><sub>KPC-3</sub> detected in ST512 and ST147 were different; however, the close genetic environments of <i>bla</i><sub>KPC-3</sub> in the different plasmids (ST147 and ST512) remained conserved.

Microbiology SpectrumVol. 13(7)
Instituto de Salud Carlos III (ES), Hospital Universitario Virgen Macarena (ES), Instituto Maimónides de Investigación Biomédica de Córdoba (ES), Centro de Investigación Biomédica en Red (ES), Hospital Universitario Reina Sofía (ES), Instituto de Biomedicina de Sevilla (ES), Hospital Universitario Virgen del Rocío (ES), Hospital Jerez Puerta del Sur (ES), University of Córdoba (ES), Universidad de Sevilla (ES)
Life below water
Openalex Percentile: Top 36%
Antibiotic Resistance in Bacteria
0.59
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.