Crystal engineering of a 1:1 5-fluorocytosine–4-hydroxybenzaldehyde cocrystal: insights from X-ray crystallography and Hirshfeld analysis

The 1:1 cocrystal of 5-fluoro-cytosine (5FC) and 4-hy-droxy-benzaldehyde (4HB), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub> has been synthesized and its structure characterized by single-crystal X-ray diffraction and Hirshfeld surface analysis. The compound crystallizes in the monoclinic <i>P</i>2<sub>1</sub>/<i>c</i> space group. A robust supra-molecular architecture is stabilized by N-H⋯O, N-H⋯N, C-H⋯O and C-H⋯F hydrogen bonds, forming <i>R</i> <sub>2</sub> <sup>2</sup>(8), <i>R</i> <sub>4</sub> <sup>4</sup>(22), <i>R</i> <sub>6</sub> <sup>6</sup>(32), and <i>R</i> <sub>8</sub> <sup>8</sup>(34) ring motifs. The N-H⋯O and N-H⋯N hydrogen bonds form strong directional inter-actions, contributing to the <i>R</i> <sub>2</sub> <sup>2</sup>(8) and <i>R</i> <sub>8</sub> <sup>8</sup>(34) motifs through dimeric and extended ring structures. O-H⋯O inter-actions link 5FC and 4HB mol-ecules, generating an <i>R</i> <sub>6</sub> <sup>6</sup>(32) ring that enhances the packing. Weaker C-H⋯F bonds help form the <i>R</i> <sub>4</sub> <sup>4</sup>(22) tetra-meric motif, supporting the overall three-dimensional supra-molecular framework. Additionally, C-F⋯π inter-actions between the fluorine atom and the aromatic ring add further to the crystal cohesion. Hirshfeld surface analysis and two-dimensional fingerprint plots confirm that O⋯H/H⋯O contacts are the most significant, highlighting the central role of hydrogen bonding in the stability and organization of the crystal structure.

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Publication Details

Journal
Acta Crystallographica Section E Crystallographic Communications
Published
2025-05-23
DOI
https://doi.org/10.1107/s2056989025004463
Primary Topic
Crystallography and molecular interactions
Type
article
Field-Weighted Citation Impact
0.00

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article

Crystal engineering of a 1:1 5-fluorocytosine–4-hydroxybenzaldehyde cocrystal: insights from X-ray crystallography and Hirshfeld analysis

Colin D. McMillen, Ray J. Butcher, Marimuthu Sangavi, M. Mohana
1 links
Acta Crystallographica Section E Crystallographic Communications
Crystallography and molecular interactions
article

Crystal engineering of a 1:1 5-fluorocytosine–4-hydroxybenzaldehyde cocrystal: insights from X-ray crystallography and Hirshfeld analysis

Colin D. McMillen, Ray J. Butcher, Marimuthu Sangavi, M. Mohana
article en

Abstract

The 1:1 cocrystal of 5-fluoro-cytosine (5FC) and 4-hy-droxy-benzaldehyde (4HB), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub> has been synthesized and its structure characterized by single-crystal X-ray diffraction and Hirshfeld surface analysis. The compound crystallizes in the monoclinic <i>P</i>2<sub>1</sub>/<i>c</i> space group. A robust supra-molecular architecture is stabilized by N-H⋯O, N-H⋯N, C-H⋯O and C-H⋯F hydrogen bonds, forming <i>R</i> <sub>2</sub> <sup>2</sup>(8), <i>R</i> <sub>4</sub> <sup>4</sup>(22), <i>R</i> <sub>6</sub> <sup>6</sup>(32), and <i>R</i> <sub>8</sub> <sup>8</sup>(34) ring motifs. The N-H⋯O and N-H⋯N hydrogen bonds form strong directional inter-actions, contributing to the <i>R</i> <sub>2</sub> <sup>2</sup>(8) and <i>R</i> <sub>8</sub> <sup>8</sup>(34) motifs through dimeric and extended ring structures. O-H⋯O inter-actions link 5FC and 4HB mol-ecules, generating an <i>R</i> <sub>6</sub> <sup>6</sup>(32) ring that enhances the packing. Weaker C-H⋯F bonds help form the <i>R</i> <sub>4</sub> <sup>4</sup>(22) tetra-meric motif, supporting the overall three-dimensional supra-molecular framework. Additionally, C-F⋯π inter-actions between the fluorine atom and the aromatic ring add further to the crystal cohesion. Hirshfeld surface analysis and two-dimensional fingerprint plots confirm that O⋯H/H⋯O contacts are the most significant, highlighting the central role of hydrogen bonding in the stability and organization of the crystal structure.

Acta Crystallographica Section E Crystallographic CommunicationsVol. 81(6)
Howard University (US), Periyar Maniammai Institute of Science & Technology (IN), Bharathidasan University (IN), Clemson University (US)
National Science Foundation, Howard University, Division of Materials Research
Openalex Percentile: Top 88%
Crystallography and molecular interactions
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