Crystal engineering of a 1:1 5-fluorocytosine–4-hydroxybenzaldehyde cocrystal: insights from X-ray crystallography and Hirshfeld analysis
The 1:1 cocrystal of 5-fluoro-cytosine (5FC) and 4-hy-droxy-benzaldehyde (4HB), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub> has been synthesized and its structure characterized by single-crystal X-ray diffraction and Hirshfeld surface analysis. The compound crystallizes in the monoclinic <i>P</i>2<sub>1</sub>/<i>c</i> space group. A robust supra-molecular architecture is stabilized by N-H⋯O, N-H⋯N, C-H⋯O and C-H⋯F hydrogen bonds, forming <i>R</i> <sub>2</sub> <sup>2</sup>(8), <i>R</i> <sub>4</sub> <sup>4</sup>(22), <i>R</i> <sub>6</sub> <sup>6</sup>(32), and <i>R</i> <sub>8</sub> <sup>8</sup>(34) ring motifs. The N-H⋯O and N-H⋯N hydrogen bonds form strong directional inter-actions, contributing to the <i>R</i> <sub>2</sub> <sup>2</sup>(8) and <i>R</i> <sub>8</sub> <sup>8</sup>(34) motifs through dimeric and extended ring structures. O-H⋯O inter-actions link 5FC and 4HB mol-ecules, generating an <i>R</i> <sub>6</sub> <sup>6</sup>(32) ring that enhances the packing. Weaker C-H⋯F bonds help form the <i>R</i> <sub>4</sub> <sup>4</sup>(22) tetra-meric motif, supporting the overall three-dimensional supra-molecular framework. Additionally, C-F⋯π inter-actions between the fluorine atom and the aromatic ring add further to the crystal cohesion. Hirshfeld surface analysis and two-dimensional fingerprint plots confirm that O⋯H/H⋯O contacts are the most significant, highlighting the central role of hydrogen bonding in the stability and organization of the crystal structure.
Authors
- Colin D. McMillen (ORCID: https://orcid.org/0000-0002-7773-8797)
- Ray J. Butcher (ORCID: https://orcid.org/0000-0003-2770-7076)
- Marimuthu Sangavi
- M. Mohana
Institutions
- Howard University (US)
- Periyar Maniammai Institute of Science & Technology (IN)
- Bharathidasan University (IN)
- Clemson University (US)
Publication Details
- Journal
- Acta Crystallographica Section E Crystallographic Communications
- Published
- 2025-05-23
- DOI
- https://doi.org/10.1107/s2056989025004463
- Primary Topic
- Crystallography and molecular interactions
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation
- Howard University
- Division of Materials Research