Evolving Dual-Directional Multiobjective Feature Selection for High-Dimensional Gene Expression Data

High-dimensional gene expression data has gained considerable attention in diverse medical fields such as disease diagnosis, with the challenges of the dimensionality curse and exponentially growing computation. To analyze the data, feature selection is an essential step by reducing the dimensionality. However, most feature selection algorithms for high-dimensional gene expression data still suffer from low classification and poor generalization ability. An evolutionary algorithm is an effective paradigm for enhancing global search capability in feature selection. Inspired by the evolutionary algorithm Competitive Swarm Optimization, we propose a Multiobjective Dual-directional Competitive Swarm Optimization (MODCSO) method for feature selection from high-dimensional gene expression data. First, we design a competitive swarm optimization algorithm framework based on multi-objective optimization to evolve three objective functions simultaneously. Then, we introduce a dual-directional learning strategy that trains particles within the loser group using two distinct learning strategies. To assess the effectiveness and efficiency of the suggested algorithm, we evaluate MODCSO through extensive experiments on twenty high-dimensional gene expression datasets and three real-world biological datasets. Compared to various leading feature selection algorithms, our proposed algorithm MODCSO exhibits superior competitiveness for the high-dimensional feature selection task. Moreover, we provide other extensive analyses to demonstrate further the robustness and biological interpretability of MODCSO in handling high-dimensional gene expression data.

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Publication Details

Journal
IEEE Journal of Biomedical and Health Informatics
Published
2025-05-22
DOI
https://doi.org/10.1109/jbhi.2025.3572310
Primary Topic
Gene expression and cancer classification
Type
article
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article

Evolving Dual-Directional Multiobjective Feature Selection for High-Dimensional Gene Expression Data

Liang Yang, Xiaomin Li, Wenyuan Xiao, Yunhe Wang et al.
IEEE Journal of Biomedical and Health Informatics
Gene expression and cancer classification
article

Evolving Dual-Directional Multiobjective Feature Selection for High-Dimensional Gene Expression Data

Liang Yang, Xiaomin Li, Wenyuan Xiao, Yunhe Wang, Zhengyu Du
article en

Abstract

High-dimensional gene expression data has gained considerable attention in diverse medical fields such as disease diagnosis, with the challenges of the dimensionality curse and exponentially growing computation. To analyze the data, feature selection is an essential step by reducing the dimensionality. However, most feature selection algorithms for high-dimensional gene expression data still suffer from low classification and poor generalization ability. An evolutionary algorithm is an effective paradigm for enhancing global search capability in feature selection. Inspired by the evolutionary algorithm Competitive Swarm Optimization, we propose a Multiobjective Dual-directional Competitive Swarm Optimization (MODCSO) method for feature selection from high-dimensional gene expression data. First, we design a competitive swarm optimization algorithm framework based on multi-objective optimization to evolve three objective functions simultaneously. Then, we introduce a dual-directional learning strategy that trains particles within the loser group using two distinct learning strategies. To assess the effectiveness and efficiency of the suggested algorithm, we evaluate MODCSO through extensive experiments on twenty high-dimensional gene expression datasets and three real-world biological datasets. Compared to various leading feature selection algorithms, our proposed algorithm MODCSO exhibits superior competitiveness for the high-dimensional feature selection task. Moreover, we provide other extensive analyses to demonstrate further the robustness and biological interpretability of MODCSO in handling high-dimensional gene expression data.

IEEE Journal of Biomedical and Health InformaticsVol. 29(11)
Hebei University of Technology (CN)
Openalex Percentile: Top 90%
Gene expression and cancer classification
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Evolving Dual-Directional Multiobjective Feature Selection for High-Dimensional Gene Expression Data — Liang Yang, Xiaomin Li, et al. · IEEE Journal of Biomedical and Health Informatics (2025) | TGRS Research Map | TGRS