Current progress of imaging-based 3D spatial transcriptomics

TSCS [12] (2) (in situ hybridization, ISH) smFISH [13][14][15][16][17] seqFISH [18,19] MERFISH [20] (3) (in situ sequencing, ISS) FISSEQ [21] HybISS [22] STARmap [23] (4)(in situ capturing technologies) ST [24] Slide-seq [25] DBiT-seq [26] MISAR-seq [27] (5) (in silico reconstruction of spatial data) Seurat [28] Tomo-seq [29] PROCEDURE [30] ViBrism DB [31] ()()

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Publication Details

Journal
Scientia Sinica Vitae
Published
2025-05-23
DOI
https://doi.org/10.1360/ssv-2025-0140
Primary Topic
Single-cell and spatial transcriptomics
Type
article
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article

Current progress of imaging-based 3D spatial transcriptomics

Shangjie Zou, Haoxian Wang, Guangdun Peng, Fuqing Jiang
Scientia Sinica Vitae
Single-cell and spatial transcriptomics
article

Current progress of imaging-based 3D spatial transcriptomics

Shangjie Zou, Haoxian Wang, Guangdun Peng, Fuqing Jiang
article en

Abstract

TSCS [12] (2) (in situ hybridization, ISH) smFISH [13][14][15][16][17] seqFISH [18,19] MERFISH [20] (3) (in situ sequencing, ISS) FISSEQ [21] HybISS [22] STARmap [23] (4)(in situ capturing technologies) ST [24] Slide-seq [25] DBiT-seq [26] MISAR-seq [27] (5) (in silico reconstruction of spatial data) Seurat [28] Tomo-seq [29] PROCEDURE [30] ViBrism DB [31] ()()

Scientia Sinica VitaeVol. 55(6)
Openalex Percentile: Top 90%
Single-cell and spatial transcriptomics
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Current progress of imaging-based 3D spatial transcriptomics — Shangjie Zou, Haoxian Wang, et al. · Scientia Sinica Vitae (2025) | TGRS Research Map | TGRS