Applying Active Learning toward Building a Generalizable Model for Ni-Photoredox Cross-Electrophile Coupling of Aryl and Alkyl Bromides

When developing machine learning models for yield prediction, the two main challenges are effectively exploring condition space and substrate space. In this article, we disclose an approach for mapping the substrate space for Ni/photoredox-catalyzed cross-electrophile coupling of alkyl bromides and aryl bromides in a high-throughput experimentation (HTE) context. This model employs active learning (in particular, uncertainty querying) as a strategy to rapidly construct a yield model. Given the vastness of substrate space, we focused on an approach that builds an initial model and then uses a minimal data set to expand into new chemical spaces. In particular, we built a model for a virtual space of 22,240 compounds using less than 400 data points. We demonstrated that the model can be expanded to 33,312 compounds by adding information around 24 building blocks (<100 additional reactions). Comparing the active learning-based model to one constructed on randomly selected data showed that the active learning model was significantly better at predicting which reactions will be successful. A combination of density function theory (DFT) and difference Morgan fingerprints was employed to construct the random forest model. Feature importance analysis indicates that key DFT features that are related to the reaction mechanism (e.g., alkyl radical LUMO energy) were crucial for model performance and predictions on aryl bromides outside the training set. We anticipate that combining DFT featurization and uncertainty-based querying will help the synthetic organic community build predictive models in a data-efficient manner for other chemical reactions that feature large and diverse scopes.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2025-05-22
DOI
https://doi.org/10.1021/jacs.5c02218
Citations
9
Primary Topic
Radical Photochemical Reactions
Type
article
Field-Weighted Citation Impact
8.42

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article

Applying Active Learning toward Building a Generalizable Model for Ni-Photoredox Cross-Electrophile Coupling of Aryl and Alkyl Bromides

Shutian Jiang, Karlheinz Wieser, Cihan Soylu, Kian L. Tan et al.
9 citations
Journal of the American Chemical Society
Radical Photochemical Reactions
8.42
article

Applying Active Learning toward Building a Generalizable Model for Ni-Photoredox Cross-Electrophile Coupling of Aryl and Alkyl Bromides

Shutian Jiang, Karlheinz Wieser, Cihan Soylu, Kian L. Tan, Abigail G. Doyle, Lucas W. Souza, Nathan D. Ricke, Sii Hong Lau, Braden C. Chaffin, Mike Fortunato, Thomas C. Caya
article en
9 citations

Abstract

When developing machine learning models for yield prediction, the two main challenges are effectively exploring condition space and substrate space. In this article, we disclose an approach for mapping the substrate space for Ni/photoredox-catalyzed cross-electrophile coupling of alkyl bromides and aryl bromides in a high-throughput experimentation (HTE) context. This model employs active learning (in particular, uncertainty querying) as a strategy to rapidly construct a yield model. Given the vastness of substrate space, we focused on an approach that builds an initial model and then uses a minimal data set to expand into new chemical spaces. In particular, we built a model for a virtual space of 22,240 compounds using less than 400 data points. We demonstrated that the model can be expanded to 33,312 compounds by adding information around 24 building blocks (<100 additional reactions). Comparing the active learning-based model to one constructed on randomly selected data showed that the active learning model was significantly better at predicting which reactions will be successful. A combination of density function theory (DFT) and difference Morgan fingerprints was employed to construct the random forest model. Feature importance analysis indicates that key DFT features that are related to the reaction mechanism (e.g., alkyl radical LUMO energy) were crucial for model performance and predictions on aryl bromides outside the training set. We anticipate that combining DFT featurization and uncertainty-based querying will help the synthetic organic community build predictive models in a data-efficient manner for other chemical reactions that feature large and diverse scopes.

Journal of the American Chemical SocietyVol. 147(22)
University of California System (US), Novartis (China) (CN)
National Institute of General Medical Sciences, Division of Graduate Education
Openalex Percentile: Top 2%
Radical Photochemical Reactions
8.42
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