Microscopic image dataset of plant-parasitic nematode

Plant-parasitic nematodes (PPNs) are a significant threat to agriculture, causing substantial crop losses worldwide. Accurate identification of PPNs is crucial for effective management strategies; however, conventional methods are time-consuming and require extensive expertise. To address this challenge, we present a comprehensive microscopic image dataset of PPNs, focusing on common plant-parasitic genera. The dataset consists of 1,016 high-resolution images categorized into 11 classes, representing a diverse range of nematode morphologies, including Hemicycliophora, Radopholus, Helicotylenchus, Trichodorus, Xiphinema, Criconemoides, Criconema, Pratylenchus, Hirschmanniella, Hoplolaimus, and Meloidogyne. Nematodes were extracted from samples of various crops exhibiting infestation symptoms using a modified Whitehead-Tray method. The extracted nematodes were fixed, cleared, stained, and mounted for microscopic observation. Images were captured using optical cameras attached to a light microscope. This dataset provides a valuable resource for developing advanced AI-based tools to automate nematode identification and support precision agriculture efforts aimed at reducing crop losses caused by PPNs. Despite limitations such as imbalanced class distribution and geographic specificity, this dataset offers a foundation for further research and the development of efficient nematode identification methods.

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Publication Details

Journal
Data in Brief
Published
2025-05-22
DOI
https://doi.org/10.1016/j.dib.2025.111687
Primary Topic
Nematode management and characterization studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Microscopic image dataset of plant-parasitic nematode

Siwi Indarti, Nabila Husna Shabrina, Rina Maharani
Data in Brief
Nematode management and characterization studies
article

Microscopic image dataset of plant-parasitic nematode

Siwi Indarti, Nabila Husna Shabrina, Rina Maharani
article en

Abstract

Plant-parasitic nematodes (PPNs) are a significant threat to agriculture, causing substantial crop losses worldwide. Accurate identification of PPNs is crucial for effective management strategies; however, conventional methods are time-consuming and require extensive expertise. To address this challenge, we present a comprehensive microscopic image dataset of PPNs, focusing on common plant-parasitic genera. The dataset consists of 1,016 high-resolution images categorized into 11 classes, representing a diverse range of nematode morphologies, including Hemicycliophora, Radopholus, Helicotylenchus, Trichodorus, Xiphinema, Criconemoides, Criconema, Pratylenchus, Hirschmanniella, Hoplolaimus, and Meloidogyne. Nematodes were extracted from samples of various crops exhibiting infestation symptoms using a modified Whitehead-Tray method. The extracted nematodes were fixed, cleared, stained, and mounted for microscopic observation. Images were captured using optical cameras attached to a light microscope. This dataset provides a valuable resource for developing advanced AI-based tools to automate nematode identification and support precision agriculture efforts aimed at reducing crop losses caused by PPNs. Despite limitations such as imbalanced class distribution and geographic specificity, this dataset offers a foundation for further research and the development of efficient nematode identification methods.

Data in BriefVol. 61
Universitas Gadjah Mada (ID), Multimedia Nusantara University (ID)
Universitas Multimedia Nusantara
Zero hunger
Openalex Percentile: Top 92%
Nematode management and characterization studies
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Microscopic image dataset of plant-parasitic nematode — Siwi Indarti, Nabila Husna Shabrina, et al. · Data in Brief (2025) | TGRS Research Map | TGRS