Insights from the Biorepository and Integrative Genomics pediatric resource

The Biorepository and Integrative Genomics (BIG) Initiative in Tennessee has developed a pioneering resource to address gaps in genomic research by linking genomic, phenotypic, and environmental data from a diverse Mid-South population, including underrepresented groups. We analyzed 13,152 exomes from BIG and found significant genetic diversity, with 50% of participants inferred to have non-European or several types of admixed ancestry. Ancestry within the BIG cohort is stratified, with distinct geographic and demographic patterns, as African ancestry is more common in urban areas, while European ancestry is more common in suburban regions. We observe ancestry-specific rates of novel genetic variants, which are enriched for functional or clinical relevance. Disease prevalence analysis linked ancestry and environmental factors, showing higher odds ratios for asthma and obesity in minority groups, particularly in the urban area. Finally, we observe discrepancies between self-reported race and genetic ancestry, with related individuals self-identifying in differing racial categories. These findings underscore the limitations of race as a biomedical variable. BIG has proven to be an effective model for community-centered precision medicine. We integrated genomics education, and fostered great trust among the contributing communities. Future goals include cohort expansion, and enhanced genomic analysis, to ensure equitable healthcare outcomes.

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Publication Details

Journal
Nature Communications
Published
2025-05-22
DOI
https://doi.org/10.1038/s41467-025-59375-0
Primary Topic
BRCA gene mutations in cancer
Type
article
Field-Weighted Citation Impact
0.00

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article

Insights from the Biorepository and Integrative Genomics pediatric resource

Akram Mohammed, Franco Leonel Marsico, Lokesh K. Chinthala, Silvia Buonaiuto et al.
Nature Communications
BRCA gene mutations in cancer
article

Insights from the Biorepository and Integrative Genomics pediatric resource

Akram Mohammed, Franco Leonel Marsico, Lokesh K. Chinthala, Silvia Buonaiuto, Ernestine K Amos-Abanyie
article en

Abstract

The Biorepository and Integrative Genomics (BIG) Initiative in Tennessee has developed a pioneering resource to address gaps in genomic research by linking genomic, phenotypic, and environmental data from a diverse Mid-South population, including underrepresented groups. We analyzed 13,152 exomes from BIG and found significant genetic diversity, with 50% of participants inferred to have non-European or several types of admixed ancestry. Ancestry within the BIG cohort is stratified, with distinct geographic and demographic patterns, as African ancestry is more common in urban areas, while European ancestry is more common in suburban regions. We observe ancestry-specific rates of novel genetic variants, which are enriched for functional or clinical relevance. Disease prevalence analysis linked ancestry and environmental factors, showing higher odds ratios for asthma and obesity in minority groups, particularly in the urban area. Finally, we observe discrepancies between self-reported race and genetic ancestry, with related individuals self-identifying in differing racial categories. These findings underscore the limitations of race as a biomedical variable. BIG has proven to be an effective model for community-centered precision medicine. We integrated genomics education, and fostered great trust among the contributing communities. Future goals include cohort expansion, and enhanced genomic analysis, to ensure equitable healthcare outcomes.

Nature CommunicationsVol. 16(1)
University of Tennessee Health Science Center (US), Regeneron (United States) (US), General Department of Preventive Medicine (VN), Institut thématique Génétique, génomique et bioinformatique (FR), Institute of Genetics and Biophysics (IT), National Research Council (IT)
National Science Foundation, University of Tennessee, National Institutes of Health, National Heart, Lung, and Blood Institute, National Institute of General Medical Sciences
Openalex Percentile: Top 87%
BRCA gene mutations in cancer
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