Passivity analysis of discrete-time genetic regulatory networks with reaction-diffusion coupling and delay-dependent stability criteria

Gene regulatory networks (GRNs) play a crucial role in biological processes, with their dynamic behaviors heavily influenced by the spatial organization of genes. In particular, reaction-diffusion mechanisms govern the coupling between adjacent spatial locations in continuous time GRNs. However, traditional models often ignore the spatial coupling and reaction-diffusion properties of these networks, especially in discrete-time settings. In order to solve this problem, a new discrete-time gene regulatory network model is proposed in this paper, which explicitly considers the mutual coupling between adjacent spatial positions. To ensure the passivity of the proposed model, delay-dependent stability criteria are established by constructing appropriate Lyapunov-Krasovskii functions formulated in terms of linear matrix inequalities. To showcase the effectiveness and validity of this approach, a numerical example is presented in this paper. The results reveal that the model accurately captures the spatial coupling and reaction-diffusion nature of gene regulatory networks in discrete time settings.

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Publication Details

Journal
Electronic Research Archive
Published
2025-01-01
DOI
https://doi.org/10.3934/era.2025136
Primary Topic
Gene Regulatory Network Analysis
Type
article
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article

Passivity analysis of discrete-time genetic regulatory networks with reaction-diffusion coupling and delay-dependent stability criteria

Yongwei Yang, Chengye Zou, Yang Yu, Chunyun Xu
Electronic Research Archive
Gene Regulatory Network Analysis
article

Passivity analysis of discrete-time genetic regulatory networks with reaction-diffusion coupling and delay-dependent stability criteria

Yongwei Yang, Chengye Zou, Yang Yu, Chunyun Xu
article en

Abstract

Gene regulatory networks (GRNs) play a crucial role in biological processes, with their dynamic behaviors heavily influenced by the spatial organization of genes. In particular, reaction-diffusion mechanisms govern the coupling between adjacent spatial locations in continuous time GRNs. However, traditional models often ignore the spatial coupling and reaction-diffusion properties of these networks, especially in discrete-time settings. In order to solve this problem, a new discrete-time gene regulatory network model is proposed in this paper, which explicitly considers the mutual coupling between adjacent spatial positions. To ensure the passivity of the proposed model, delay-dependent stability criteria are established by constructing appropriate Lyapunov-Krasovskii functions formulated in terms of linear matrix inequalities. To showcase the effectiveness and validity of this approach, a numerical example is presented in this paper. The results reveal that the model accurately captures the spatial coupling and reaction-diffusion nature of gene regulatory networks in discrete time settings.

Electronic Research ArchiveVol. 33(5)
Yanshan University (CN), Qinzhou Maternity and Child Health Care Hospital (CN), Tongling University (CN), First Hospital of Qinhuangdao (CN)
Openalex Percentile: Top 90%
Gene Regulatory Network Analysis
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Passivity analysis of discrete-time genetic regulatory networks with reaction-diffusion coupling and delay-dependent stability criteria — Yongwei Yang, Chengye Zou, et al. · Electronic Research Archive (2025) | TGRS Research Map | TGRS