Bioinformatics-Guided Experimental Validation Identifies NQO1 as a Senescence-Ferroptosis Hub in Liver Fibrosis

<b>Background:</b> As a pivotal point for the development of liver diseases, liver fibrosis (LF) is closely associated with cellular senescence and ferroptosis. However, there is a lack of effective markers that accurately predict LF status. This study aims to identify key genes involved in LF through bioinformatics analysis and experimental validation. <b>Methods:</b> We used bioinformatics analysis of Gene Expression Omnibus (GEO) data to investigate the gene functions, prognostic value, and immune associations of characteristic genes in LF. Functional enrichment analysis of DEGs was performed using GO and KEGG. Immune cell types and their proportions were estimated with CIBERSORTx. In addition, we analyzed the role of NQO1 in LF using IHC, WB, PCR, and flow cytometry. <b>Results:</b> Bioinformatics analysis identified 10 hub genes, including <i>AR, CDKN1A, GJA1, CTSB, HIF1A, HMGB1, NQO1, PARP1, PTEN</i>, and <i>TXN</i>. Among them, <i>NQO1</i> was strongly correlated with immune cell activity. Experimental validation confirmed that NQO1 is upregulated and promotes αSMA and COL1A1 expression in hepatic stellate cells (HSCs). Knockdown of <i>NQO1</i> significantly affected the proliferation of HSCs. <b>Conclusions:</b> NQO1 plays a critical role in HSC senescence and ferroptosis, promoting HSC activation and contributing to LF progression. Our findings suggest that NQO1 may serve as a potential biomarker for LF.

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Publication Details

Journal
Biomedicines
Published
2025-05-20
DOI
https://doi.org/10.3390/biomedicines13051249
Primary Topic
Liver Disease Diagnosis and Treatment
Type
article
Field-Weighted Citation Impact
0.00

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article

Bioinformatics-Guided Experimental Validation Identifies NQO1 as a Senescence-Ferroptosis Hub in Liver Fibrosis

Yue Tan, Fang Peng, Xiang‐Qian Zhang, Huan Li et al.
1 links
Biomedicines
Liver Disease Diagnosis and Treatment
article

Bioinformatics-Guided Experimental Validation Identifies NQO1 as a Senescence-Ferroptosis Hub in Liver Fibrosis

Yue Tan, Fang Peng, Xiang‐Qian Zhang, Huan Li, Ning Li, Xinying Zhang, Mengru Chen, Ziyue Yang, Chunmeng Fu
article en

Abstract

<b>Background:</b> As a pivotal point for the development of liver diseases, liver fibrosis (LF) is closely associated with cellular senescence and ferroptosis. However, there is a lack of effective markers that accurately predict LF status. This study aims to identify key genes involved in LF through bioinformatics analysis and experimental validation. <b>Methods:</b> We used bioinformatics analysis of Gene Expression Omnibus (GEO) data to investigate the gene functions, prognostic value, and immune associations of characteristic genes in LF. Functional enrichment analysis of DEGs was performed using GO and KEGG. Immune cell types and their proportions were estimated with CIBERSORTx. In addition, we analyzed the role of NQO1 in LF using IHC, WB, PCR, and flow cytometry. <b>Results:</b> Bioinformatics analysis identified 10 hub genes, including <i>AR, CDKN1A, GJA1, CTSB, HIF1A, HMGB1, NQO1, PARP1, PTEN</i>, and <i>TXN</i>. Among them, <i>NQO1</i> was strongly correlated with immune cell activity. Experimental validation confirmed that NQO1 is upregulated and promotes αSMA and COL1A1 expression in hepatic stellate cells (HSCs). Knockdown of <i>NQO1</i> significantly affected the proliferation of HSCs. <b>Conclusions:</b> NQO1 plays a critical role in HSC senescence and ferroptosis, promoting HSC activation and contributing to LF progression. Our findings suggest that NQO1 may serve as a potential biomarker for LF.

BiomedicinesVol. 13(5)
University of Southern California (US), Central South University (CN), Fudan University (CN), Zhongshan Hospital (CN), Xiangya Hospital Central South University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Hunan Province
Good health and well-being
Openalex Percentile: Top 84%
Liver Disease Diagnosis and Treatment
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