Stabilization of Boolean Networks: A Model-Free Constrained State-Flipped Control Approach

In this paper, we explore the stabilization of Boolean Networks (BNs) under state-flipped control, incorporating three key constraints to address the challenges of disease treatment response times and the practical limitations of therapeutic interventions. Our approach includes: (i) a feasible flipped nodes constraint to ensure a subset of nodes can be realistically manipulated; (ii) a transient period constraint to align treatment with time-sensitive windows of therapeutic opportunity; and (iii) a constraint on the number of flip transitions to minimize resource consumption and potential side effects. Furthermore, an evolution selection rule is set for the BNs. Then, a necessary and sufficient condition is given for the stabilization under the above constraints. We present a modified Q-learning (QL) algorithm to design a policy for stabilization under constraints in the model-free case. Finally, BN models of metastatic melanoma network and T-cell large granular lymphocyte (T-LGL) network are considered to show the applicability of our results.

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Publication Details

Journal
IEEE Transactions on Automation Science and Engineering
Published
2025-01-01
DOI
https://doi.org/10.1109/tase.2025.3569241
Citations
3
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
2.42

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article

Stabilization of Boolean Networks: A Model-Free Constrained State-Flipped Control Approach

Jinde Cao, Zejiao Liu, Amol Yerudkar, Yang Liu
3 citations
IEEE Transactions on Automation Science and Engineering
Gene Regulatory Network Analysis
2.42
article

Stabilization of Boolean Networks: A Model-Free Constrained State-Flipped Control Approach

Jinde Cao, Zejiao Liu, Amol Yerudkar, Yang Liu
article en
3 citations

Abstract

In this paper, we explore the stabilization of Boolean Networks (BNs) under state-flipped control, incorporating three key constraints to address the challenges of disease treatment response times and the practical limitations of therapeutic interventions. Our approach includes: (i) a feasible flipped nodes constraint to ensure a subset of nodes can be realistically manipulated; (ii) a transient period constraint to align treatment with time-sensitive windows of therapeutic opportunity; and (iii) a constraint on the number of flip transitions to minimize resource consumption and potential side effects. Furthermore, an evolution selection rule is set for the BNs. Then, a necessary and sufficient condition is given for the stabilization under the above constraints. We present a modified Q-learning (QL) algorithm to design a policy for stabilization under constraints in the model-free case. Finally, BN models of metastatic melanoma network and T-cell large granular lymphocyte (T-LGL) network are considered to show the applicability of our results.

IEEE Transactions on Automation Science and EngineeringVol. 22
Zhejiang Normal University (CN), Southeast University (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 12%
Gene Regulatory Network Analysis
2.42
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