<i>Malassezia</i> in environmental studies is derived from human inputs

<i>Malassezia</i> is the singular fungus most associated with humans. It colonizes mammalian skin and requires host-derived fatty acids to grow. Widespread sequencing of environmental DNA surprisingly showed that <i>Malassezia</i> is also ubiquitous outside of mammalian hosts. <i>Malassezia</i> is frequently found in marine habitats where it is associated with corals, deep sea vents, diatoms, and more. Given its widespread presence, we reasoned that public metagenomic data could be used to assemble a genome sequence of an uncultured marine <i>Malassezia</i>. However, we found that <i>Malassezia</i> was ubiquitous but never abundant in marine samples and that the few metagenomes we could assemble were consistent with recent human introduction. We also found that the presence of human DNA in sequencing data sets is strongly correlated with the presence of <i>Malassezia</i> DNA, and while not ruling out the growth and survival of <i>Malassezia</i> in marine habitats, they suggest widespread contamination of public data with <i>Malassezia</i>.

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Publication Details

Journal
mBio
Published
2025-05-19
DOI
https://doi.org/10.1128/mbio.01142-25
Citations
8
Primary Topic
Nail Diseases and Treatments
Type
article
Field-Weighted Citation Impact
10.83

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article

Malassezia in environmental studies is derived from human inputs

Anthony S. Amend, Timothy Y. James, Saleh Rahimlou
8 citations
mBio
Nail Diseases and Treatments
10.83
article

Malassezia in environmental studies is derived from human inputs

Anthony S. Amend, Timothy Y. James, Saleh Rahimlou
article en
8 citations

Abstract

<i>Malassezia</i> is the singular fungus most associated with humans. It colonizes mammalian skin and requires host-derived fatty acids to grow. Widespread sequencing of environmental DNA surprisingly showed that <i>Malassezia</i> is also ubiquitous outside of mammalian hosts. <i>Malassezia</i> is frequently found in marine habitats where it is associated with corals, deep sea vents, diatoms, and more. Given its widespread presence, we reasoned that public metagenomic data could be used to assemble a genome sequence of an uncultured marine <i>Malassezia</i>. However, we found that <i>Malassezia</i> was ubiquitous but never abundant in marine samples and that the few metagenomes we could assemble were consistent with recent human introduction. We also found that the presence of human DNA in sequencing data sets is strongly correlated with the presence of <i>Malassezia</i> DNA, and while not ruling out the growth and survival of <i>Malassezia</i> in marine habitats, they suggest widespread contamination of public data with <i>Malassezia</i>.

mBioVol. 16(6)
University of Hawaiʻi at Mānoa (US), University of Hawaii System (US), University of Michigan (US), Pacific Biosciences (United States) (US)
Gordon and Betty Moore Foundation, Canadian Institute for Advanced Research
Life below water
Openalex Percentile: Top 1%
Nail Diseases and Treatments
10.83
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