Using Physics-Informed Neural Networks for Modeling Biological and Epidemiological Dynamical Systems

Physics-Informed Neural Networks (PINNs) have emerged as a powerful approach for integrating physical laws into a deep learning framework, offering enhanced capabilities for solving complex problems. Despite their potential, the practical implementation of PINNs presents significant challenges. This paper explores the application of PINNs to systems of ordinary differential equations (ODEs), focusing on two key challenges: the forward problem of solution approximation and the inverse problem of parameter estimation. We present three detailed case studies involving dynamical systems for tumor growth, gene expression, and the SIR (Susceptible, Infected, Recovered) model for disease spread. This paper outlines the core principles of PINNs and their integration with physical laws during neural network training. It details the steps involved in implementing PINNs, emphasizing the critical role of network architecture and hyperparameter tuning in achieving optimal performance. Additionally, we provide a Python package, ODE-PINN, to reproduce results for ODE-based systems. Our findings demonstrate that PINNs can yield accurate and consistent solutions, but their performance is highly sensitive to network architecture and hyperparameters tuning. These results underscore the need for customized configurations and robust optimization strategies. Overall, this study confirms the significant potential of PINNs to advance the understanding of dynamical systems in biology and epidemiology.

Authors

Institutions

Publication Details

Journal
Mathematics
Published
2025-05-19
DOI
https://doi.org/10.3390/math13101664
Citations
10
Primary Topic
Model Reduction and Neural Networks
Type
article
Field-Weighted Citation Impact
13.24
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Using Physics-Informed Neural Networks for Modeling Biological and Epidemiological Dynamical Systems

Olli Yli‐Harja, Frank Emmert‐Streib, Amer Farea
10 citations
Mathematics
Model Reduction and Neural Networks
13.24
article

Using Physics-Informed Neural Networks for Modeling Biological and Epidemiological Dynamical Systems

Olli Yli‐Harja, Frank Emmert‐Streib, Amer Farea
article en
10 citations

Abstract

Physics-Informed Neural Networks (PINNs) have emerged as a powerful approach for integrating physical laws into a deep learning framework, offering enhanced capabilities for solving complex problems. Despite their potential, the practical implementation of PINNs presents significant challenges. This paper explores the application of PINNs to systems of ordinary differential equations (ODEs), focusing on two key challenges: the forward problem of solution approximation and the inverse problem of parameter estimation. We present three detailed case studies involving dynamical systems for tumor growth, gene expression, and the SIR (Susceptible, Infected, Recovered) model for disease spread. This paper outlines the core principles of PINNs and their integration with physical laws during neural network training. It details the steps involved in implementing PINNs, emphasizing the critical role of network architecture and hyperparameter tuning in achieving optimal performance. Additionally, we provide a Python package, ODE-PINN, to reproduce results for ODE-based systems. Our findings demonstrate that PINNs can yield accurate and consistent solutions, but their performance is highly sensitive to network architecture and hyperparameters tuning. These results underscore the need for customized configurations and robust optimization strategies. Overall, this study confirms the significant potential of PINNs to advance the understanding of dynamical systems in biology and epidemiology.

MathematicsVol. 13(10)
Tampere University (FI), Institute for Systems Biology (US)
Openalex Percentile: Top 1%
Model Reduction and Neural Networks
13.24
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.