LLPS REDIFINE allows the biophysical characterization of multicomponent condensates without tags or labels

Liquid-liquid phase separation (LLPS) phenomenon plays a vital role in multiple cell biology processes, providing a mechanism to concentrate biomolecules and promote cellular reactions locally. Despite its significance in biology, there is a lack of conventional techniques suitable for studying biphasic samples in their biologically relevant form. Here, we present a label-free and non-invasive approach to characterize biomolecular condensates termed LLPS REstricted DIFusion of INvisible speciEs (REDIFINE). Relying on diffusion NMR measurements, REDIFINE exploits the exchange dynamics between molecules in the condensed and dispersed phases to determine not only diffusion constants and the fractions in both phases but also the average radius of the condensed droplets and the exchange rate between the phases. Observing proteins, RNAs, water, as well as small molecules, and even assessing the concentrations of biomolecules in both phases, REDIFINE analysis allows a rapid biophysical characterization of multicomponent condensates which is important to understand their functional roles. In comparing multiple systems, REDIFINE reveals that folded RNA-binding proteins form smaller and more dynamic droplets compared to the disordered ones.

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Publication Details

Journal
Nature Communications
Published
2025-05-19
DOI
https://doi.org/10.1038/s41467-025-59759-2
Citations
12
Primary Topic
RNA Research and Splicing
Type
article
Field-Weighted Citation Impact
9.67

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article

LLPS REDIFINE allows the biophysical characterization of multicomponent condensates without tags or labels

Yinan Ni, Yaning Han, Leonidas Emmanouilidis, Frédéric H.‐T. Allain et al.
12 citations
Nature Communications
RNA Research and Splicing
9.67
article

LLPS REDIFINE allows the biophysical characterization of multicomponent condensates without tags or labels

Yinan Ni, Yaning Han, Leonidas Emmanouilidis, Frédéric H.‐T. Allain, Mihajlo Novakovic, Nina C. Kathe
article en
12 citations

Abstract

Liquid-liquid phase separation (LLPS) phenomenon plays a vital role in multiple cell biology processes, providing a mechanism to concentrate biomolecules and promote cellular reactions locally. Despite its significance in biology, there is a lack of conventional techniques suitable for studying biphasic samples in their biologically relevant form. Here, we present a label-free and non-invasive approach to characterize biomolecular condensates termed LLPS REstricted DIFusion of INvisible speciEs (REDIFINE). Relying on diffusion NMR measurements, REDIFINE exploits the exchange dynamics between molecules in the condensed and dispersed phases to determine not only diffusion constants and the fractions in both phases but also the average radius of the condensed droplets and the exchange rate between the phases. Observing proteins, RNAs, water, as well as small molecules, and even assessing the concentrations of biomolecules in both phases, REDIFINE analysis allows a rapid biophysical characterization of multicomponent condensates which is important to understand their functional roles. In comparing multiple systems, REDIFINE reveals that folded RNA-binding proteins form smaller and more dynamic droplets compared to the disordered ones.

Nature CommunicationsVol. 16(1)
ETH Zurich (CH), Institute for Biomedical Engineering (CH)
National Science Foundation, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Openalex Percentile: Top 2%
RNA Research and Splicing
9.67
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