Decoding genetic divergence: TPMT and NUDT15 polymorphisms in north India mirror Caucasian ancestry

1 sian populations, approximately 90.00% exhibit normal TPMT activity, while 10.00% have intermediate activity and a mere 0.30% lack enzyme function entirely.Conversely, NUDT15 variants, which are infrequent in Caucasians, are notably more common in East Asians, where mutant genotypes necessitate thiopurine dose reductions.Such variability underscores the necessity of region-specific pharmacogenetic data to guide clinical practice. 2,5e evaluated the prevalence of NUDT15 and TPMT polymorphisms in north Indian IBD cohort.This study was approved by the Institutional Review Board of Dayanand Medical College and Hospital (IRB No. DMCH/R & D/2020/23).Written informed consent was waived.Peripheral blood samples (2 mL) were collected in EDTA vials, and DNA was isolated using the QIAamp DNA Mini Kit.Samples (200 L) were processed with proteinase K, lysis buffer, and ethanol, followed by centrifugation through QIAamp spin columns.The eluted DNA was stored in autoclaved tubes, and quality was verified using a NanoDrop spectrophotometer.Polymerase chain reaction amplification targeted TPMT (c.238 G > C, c.460 G > A, c.719A > G) and NUDT15 polymorphisms (c.415 C > T;R139C).Digestion with restriction enzymes (Hpy10F) and restriction fragment length polymorphism analysis were performed, and products were visualized using agarose gel electrophoresis with ethidium bromide staining under ultraviolet light. 3mong 454 patients (mean age 45.00 29.69 years, 251 males [55.40%]), 1 patient (0.22%) was heterozygous for NUDT15 polymorphism with rest all having wild type gene.Twenty patients (4.40%) had TPMT polymorphisms, out of which 4

Authors

Institutions

Publication Details

Journal
Intestinal Research
Published
2025-05-19
DOI
https://doi.org/10.5217/ir.2024.00027
Citations
1
Primary Topic
RNA modifications and cancer
Type
article
Field-Weighted Citation Impact
0.81
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Decoding genetic divergence: TPMT and NUDT15 polymorphisms in north India mirror Caucasian ancestry

Arshdeep Singh, Manjeet Kumar Goyal, Raj K. Pandita, Barjinderjit K. Dhillon et al.
1 citations
Intestinal Research
RNA modifications and cancer
0.81
article

Decoding genetic divergence: TPMT and NUDT15 polymorphisms in north India mirror Caucasian ancestry

Arshdeep Singh, Manjeet Kumar Goyal, Raj K. Pandita, Barjinderjit K. Dhillon, Ajit Sood, Vandana Midha
article en
1 citations

Abstract

1 sian populations, approximately 90.00% exhibit normal TPMT activity, while 10.00% have intermediate activity and a mere 0.30% lack enzyme function entirely.Conversely, NUDT15 variants, which are infrequent in Caucasians, are notably more common in East Asians, where mutant genotypes necessitate thiopurine dose reductions.Such variability underscores the necessity of region-specific pharmacogenetic data to guide clinical practice. 2,5e evaluated the prevalence of NUDT15 and TPMT polymorphisms in north Indian IBD cohort.This study was approved by the Institutional Review Board of Dayanand Medical College and Hospital (IRB No. DMCH/R & D/2020/23).Written informed consent was waived.Peripheral blood samples (2 mL) were collected in EDTA vials, and DNA was isolated using the QIAamp DNA Mini Kit.Samples (200 L) were processed with proteinase K, lysis buffer, and ethanol, followed by centrifugation through QIAamp spin columns.The eluted DNA was stored in autoclaved tubes, and quality was verified using a NanoDrop spectrophotometer.Polymerase chain reaction amplification targeted TPMT (c.238 G > C, c.460 G > A, c.719A > G) and NUDT15 polymorphisms (c.415 C > T;R139C).Digestion with restriction enzymes (Hpy10F) and restriction fragment length polymorphism analysis were performed, and products were visualized using agarose gel electrophoresis with ethidium bromide staining under ultraviolet light. 3mong 454 patients (mean age 45.00 29.69 years, 251 males [55.40%]), 1 patient (0.22%) was heterozygous for NUDT15 polymorphism with rest all having wild type gene.Twenty patients (4.40%) had TPMT polymorphisms, out of which 4

Intestinal ResearchVol. 24(1)
Dayanand Medical College & Hospital (IN), All India Institute of Medical Sciences (IN)
Openalex Percentile: Top 28%
RNA modifications and cancer
0.81
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.