Machine Learning-Base Drug Repurposing for Amyotrophic Lateral Sclerosis (ALS)

<p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="first" dir="auto" id="d825523e87">This study presents a machine learning-based framework for drug repurposing with open source datasets, leveraging cheminformatics and generative modeling to identify compounds with potential therapeutic relevance for neurodegenerative diseases such as Amyotrophic Lateral Sclerosis (ALS). A Random Forest classifier was trained on molecular fingerprints derived from known ALS drugs and structurally diverse non-ALS compounds, achieving an overall accuracy of 91.2% despite class imbalance. To explore a deep learning framework, a Generative Adversarial Network (GAN) was developed and trained to produce novel drug-like fingerprints. All ten generated samples were predicted as ALS-targeting by the classifier. Structural similarity analysis revealed resemblance to approved drugs, with a Tanimoto similarity of 0.214. Dimensionality reduction via PCA and t-SNE showed clustering between generated and real ALS-related fingerprints. These results support the utility of combining classification and generative models for computational drug repurposing in neurodegenerative disease research.

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Publication Details

Published
2025-04-29
DOI
https://doi.org/10.58647/rexpo.25000077.v1
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

Machine Learning-Base Drug Repurposing for Amyotrophic Lateral Sclerosis (ALS)

Hannah Archer
Computational Drug Discovery Methods
article

Machine Learning-Base Drug Repurposing for Amyotrophic Lateral Sclerosis (ALS)

Hannah Archer
article en

Abstract

<p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="first" dir="auto" id="d825523e87">This study presents a machine learning-based framework for drug repurposing with open source datasets, leveraging cheminformatics and generative modeling to identify compounds with potential therapeutic relevance for neurodegenerative diseases such as Amyotrophic Lateral Sclerosis (ALS). A Random Forest classifier was trained on molecular fingerprints derived from known ALS drugs and structurally diverse non-ALS compounds, achieving an overall accuracy of 91.2% despite class imbalance. To explore a deep learning framework, a Generative Adversarial Network (GAN) was developed and trained to produce novel drug-like fingerprints. All ten generated samples were predicted as ALS-targeting by the classifier. Structural similarity analysis revealed resemblance to approved drugs, with a Tanimoto similarity of 0.214. Dimensionality reduction via PCA and t-SNE showed clustering between generated and real ALS-related fingerprints. These results support the utility of combining classification and generative models for computational drug repurposing in neurodegenerative disease research.

University of Tennessee at Chattanooga (US)
Zero hunger
Openalex Percentile: Top 88%
Computational Drug Discovery Methods
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Machine Learning-Base Drug Repurposing for Amyotrophic Lateral Sclerosis (ALS) — Hannah Archer · (2025) | TGRS Research Map | TGRS