Exploring Zero-Shot Cross-Lingual Biomedical Concept Normalization via Large Language Models

Over the past few years, discriminative and generative large language models (LLMs) have emerged as the predominant approaches in natural language processing. However, despite significant advancements, there remains a gap in comparing the performance of discriminative and generative LLMs in cross-lingual biomedical concept normalization. In this paper, we perform a comparative study across several LLMs on the challenging task of cross-lingual biomedical concept normalization via dense retrieval. We utilize the XL-BEL dataset covering 10 languages to evaluate the model's capacity to generalize across various linguistic contexts without further adaptation. The experimental findings demonstrate that e5, a discriminative model, exhibited superior performance, whereas BioMistral emerged as the top-performing generative LLM. The code for reproducing the experiments is available at: https://github.com/hrouhizadeh/zsh_cl_bcn.

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Publication Details

Journal
Studies in health technology and informatics
Published
2025-05-15
DOI
https://doi.org/10.3233/shti250467
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
0.00
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article

Exploring Zero-Shot Cross-Lingual Biomedical Concept Normalization via Large Language Models

Anthony Yazdani, Douglas Teodoro, Hossein Rouhizadeh, Boya Zhang
Studies in health technology and informatics
Biomedical Text Mining and Ontologies
article

Exploring Zero-Shot Cross-Lingual Biomedical Concept Normalization via Large Language Models

Anthony Yazdani, Douglas Teodoro, Hossein Rouhizadeh, Boya Zhang
article en

Abstract

Over the past few years, discriminative and generative large language models (LLMs) have emerged as the predominant approaches in natural language processing. However, despite significant advancements, there remains a gap in comparing the performance of discriminative and generative LLMs in cross-lingual biomedical concept normalization. In this paper, we perform a comparative study across several LLMs on the challenging task of cross-lingual biomedical concept normalization via dense retrieval. We utilize the XL-BEL dataset covering 10 languages to evaluate the model's capacity to generalize across various linguistic contexts without further adaptation. The experimental findings demonstrate that e5, a discriminative model, exhibited superior performance, whereas BioMistral emerged as the top-performing generative LLM. The code for reproducing the experiments is available at: https://github.com/hrouhizadeh/zsh_cl_bcn.

Studies in health technology and informaticsVol. 327
University of Geneva (CH)
Openalex Percentile: Top 79%
Biomedical Text Mining and Ontologies
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