Mitigating Catastrophic Forgetting in Molecular Property Prediction via Refresh Learning and Pareto Optimization

Continual Learning (CL) enables Large Language Models (LLMs) to adapt to new episodes and data streams without forgetting previously acquired knowledge, a critical requirement for dynamic fields like Molecular property Prediction (MP). LLMs, however, often face Catastrophic Forgetting (CF), where learning new information erodes prior knowledge, particularly when data distributions shift significantly between episodes, as seen in chemical, genomic, and proteomic datasets. To address CF, the existing replay-based techniques use memory buffers to store past episode data but often overlook the relationships between episodes, resulting in sub-optimal performance when revisiting earlier episodes. To this, the paper proposes a Multi-task Learning (MTL) framework that reconciles existing CL techniques into a unified hierarchical gradient aggregation framework. It builds a novel framework using the ChemBERTa model, namely MTL-PORL (Multi-task Learner-Pareto Optimized Refresh Learning), i.e., Refresh Learning (RL), inspired by neuroscience, where the brain discards outdated information to enhance retention and facilitate new learning with Pareto Optimization (PO) for MP. The hyper-gradient approach in the MTL-PORL leverages unlearning current data before relearning it, acting as a flexible plug-in that enhances existing CL methods. The MTL-PORL exhibits Anytime Average Accuracy (91.63%, 94.89%, and 92.67%), Test Accuracy (92.48%, 96.48%, and 96.86%), and Forgetting Measure (-0.0048, -0.0045, and -0.0063) on the BBBP, bitter, and sweet datasets, respectively. The comprehensive empirical analysis highlighted significant improvements in sequential learning compared to existing methods, addressing the stability-plasticity trade-off and effectiveness of RL.

Authors

Institutions

Publication Details

Journal
IEEE Transactions on Computational Biology and Bioinformatics
Published
2025-05-16
DOI
https://doi.org/10.1109/tcbbio.2025.3571046
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Mitigating Catastrophic Forgetting in Molecular Property Prediction via Refresh Learning and Pareto Optimization

Dheeraj Mishra, Sakshi Ranjan, Sanjay Kumar Singh
IEEE Transactions on Computational Biology and Bioinformatics
Machine Learning in Materials Science
article

Mitigating Catastrophic Forgetting in Molecular Property Prediction via Refresh Learning and Pareto Optimization

Dheeraj Mishra, Sakshi Ranjan, Sanjay Kumar Singh
article en

Abstract

Continual Learning (CL) enables Large Language Models (LLMs) to adapt to new episodes and data streams without forgetting previously acquired knowledge, a critical requirement for dynamic fields like Molecular property Prediction (MP). LLMs, however, often face Catastrophic Forgetting (CF), where learning new information erodes prior knowledge, particularly when data distributions shift significantly between episodes, as seen in chemical, genomic, and proteomic datasets. To address CF, the existing replay-based techniques use memory buffers to store past episode data but often overlook the relationships between episodes, resulting in sub-optimal performance when revisiting earlier episodes. To this, the paper proposes a Multi-task Learning (MTL) framework that reconciles existing CL techniques into a unified hierarchical gradient aggregation framework. It builds a novel framework using the ChemBERTa model, namely MTL-PORL (Multi-task Learner-Pareto Optimized Refresh Learning), i.e., Refresh Learning (RL), inspired by neuroscience, where the brain discards outdated information to enhance retention and facilitate new learning with Pareto Optimization (PO) for MP. The hyper-gradient approach in the MTL-PORL leverages unlearning current data before relearning it, acting as a flexible plug-in that enhances existing CL methods. The MTL-PORL exhibits Anytime Average Accuracy (91.63%, 94.89%, and 92.67%), Test Accuracy (92.48%, 96.48%, and 96.86%), and Forgetting Measure (-0.0048, -0.0045, and -0.0063) on the BBBP, bitter, and sweet datasets, respectively. The comprehensive empirical analysis highlighted significant improvements in sequential learning compared to existing methods, addressing the stability-plasticity trade-off and effectiveness of RL.

IEEE Transactions on Computational Biology and BioinformaticsVol. 22(4)
Chhattisgarh Swami Vivekanand Technical University (IN), Indian Institute of Technology BHU (IN), Banaras Hindu University (IN)
Openalex Percentile: Top 93%
Machine Learning in Materials Science
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.